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We propose a MAP Bayesian approach to perform and evaluate a co-clustering of mixed-type data tables. The proposed model infers an optimal segmentation of all variables then performs a co-clustering by minimizing a Bayesian model selection…

Machine Learning · Statistics 2019-02-07 Aichetou Bouchareb , Marc Boullé , Fabrice Rossi , Fabrice Clérot

Few-shot dense retrieval (DR) aims to effectively generalize to novel search scenarios by learning a few samples. Despite its importance, there is little study on specialized datasets and standardized evaluation protocols. As a result,…

Computation and Language · Computer Science 2023-04-13 Si Sun , Yida Lu , Shi Yu , Xiangyang Li , Zhonghua Li , Zhao Cao , Zhiyuan Liu , Deiming Ye , Jie Bao

Time-course gene expression data such as yeast cell cycle data may be periodically expressed. To cluster such data, currently used Fourier series approximations of periodic gene expressions have been found not to be sufficiently adequate to…

Methodology · Statistics 2011-09-23 K. Wang , S. K. Ng , G. J. McLachlan

We present an approach, called the "Shadow Method," for the identification of disease loci from dense genetic marker maps in complex, potentially incomplete pedigrees. "Shadow" is a simple method based on an analysis of the patterns of…

Genomics · Quantitative Biology 2007-10-31 Gregory Leibon , Daniel Rockmore , Martin Pollak

One of important aims of astronomical data mining is to systematically search for specific rare objects in a massive spectral dataset, given a small fraction of identified samples with the same type. Most existing methods are mainly based…

Astrophysics of Galaxies · Physics 2016-03-23 Changde Du , Ali Luo , Haifeng Yang , Wen Hou , Yanxin Guo

We outline a new method to compute the Bayes Factor for model selection which bypasses the Bayesian Evidence. Our method combines multiple models into a single, nested, Supermodel using one or more hyperparameters. Since the models are now…

Instrumentation and Methods for Astrophysics · Physics 2016-09-09 A. Mootoovaloo , Bruce A. Bassett , M. Kunz

Clustering methods are popular for revealing structure in data, particularly in the high-dimensional setting common to contemporary data science. A central statistical question is, "are the clusters really there?" One pioneering method in…

Methodology · Statistics 2023-08-28 Thomas H. Keefe , J. S. Marron

We consider the problem of landmark matching between two unlabelled point sets, in particular where the number of points in each cloud may differ, and where points in each cloud may not have a corresponding match. We invoke a Bayesian…

Methodology · Statistics 2022-06-01 Jessica E. Forsyth , Ali H. Al-Anbaki , Berenika Plusa , Simon L. Cotter

Insect monitoring is crucial for understanding the consequences of rapid ecological changes, but taxa identification currently requires tedious manual expert work and cannot be scaled-up efficiently. Deep convolutional neural networks…

Computer Vision and Pattern Recognition · Computer Science 2021-01-07 Fahad Sohrab , Jenni Raitoharju

We consider a method to jointly estimate sparse precision matrices and their underlying graph structures using dependent high-dimensional datasets. We present a penalized maximum likelihood estimator which encourages both sparsity and…

Applications · Statistics 2016-08-22 Adria Caballe , Natalia Bochkina , Claus Mayer

In this paper, we consider the statistical analysis of a protein interaction network. We propose a Bayesian model that uses a hierarchy of probabilistic assumptions about the way proteins interact with one another in order to: (i) identify…

Molecular Networks · Quantitative Biology 2007-11-15 Edoardo M Airoldi , David M Blei , Stephen E Fienberg , Eric P Xing

In high-dimensional settings, sparse structures are critical for efficiency in term of memory and computation complexity. For a linear system, to find the sparsest solution provided with an over-complete dictionary of features directly is…

Machine Learning · Statistics 2020-07-09 Yiping Jiang , Tianshi Chen

Machine Learning methods have of late made significant efforts to solving multidisciplinary problems in the field of cancer classification using microarray gene expression data. Feature subset selection methods can play an important role in…

Computational Engineering, Finance, and Science · Computer Science 2013-03-04 G. Prat , Ll. Belanche

Anomalies are those deviating from the norm. Unsupervised anomaly detection often translates to identifying low density regions. Major problems arise when data is high-dimensional and mixed of discrete and continuous attributes. We propose…

Machine Learning · Computer Science 2016-10-21 Kien Do , Truyen Tran , Svetha Venkatesh

Several Deep Learning (DL) methods have recently been proposed for an automated identification of kidney stones during an ureteroscopy to enable rapid therapeutic decisions. Even if these DL approaches led to promising results, they are…

Predictive recursion is an accurate and computationally efficient algorithm for nonparametric estimation of mixing densities in mixture models. In semiparametric mixture models, however, the algorithm fails to account for any uncertainty in…

Methodology · Statistics 2015-03-19 Ryan Martin , Surya T. Tokdar

Pattern formation in biological tissues plays an important role in the development of living organisms. Since the classical work of Alan Turing, a pre-eminent way of modelling has been through reaction-diffusion mechanisms. More recently,…

Analysis of PDEs · Mathematics 2023-01-27 Alexey Kazarnikov , Robert Scheichl , Heikki Haario , Anna Marciniak-Czochra

Detection of anomalous situations for complex mission-critical systems hold paramount importance when their service continuity needs to be ensured. A major challenge in detecting anomalies from the operational data arises due to the…

Machine Learning · Computer Science 2025-05-20 Shanay Mehta , Shlok Mehendale , Nicole Fernandes , Jyotirmoy Sarkar , Santonu Sarkar , Snehanshu Saha

We propose a probabilistic model for interpreting gene expression levels that are observed through single-cell RNA sequencing. In the model, each cell has a low-dimensional latent representation. Additional latent variables account for…

Machine Learning · Computer Science 2018-01-18 Romain Lopez , Jeffrey Regier , Michael Cole , Michael Jordan , Nir Yosef

Recent advances in molecular biology allow the quantification of the transcriptome and scoring transcripts as differentially or equally expressed between two biological conditions. Although these two tasks are closely linked, the available…

Methodology · Statistics 2017-02-08 Panagiotis Papastamoulis , Magnus Rattray
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