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Hierarchical Clustering trees have been widely accepted as a useful form of clustering data, resulting in a prevalence of adopting fields including phylogenetics, image analysis, bioinformatics and more. Recently, Dasgupta (STOC 16')…

Data Structures and Algorithms · Computer Science 2020-06-04 Noga Alon , Yossi Azar , Danny Vainstein

Triangle counting in hypergraph streams, including both hyper-vertex and hyper-edge triangles, is a fundamental problem in hypergraph analytics, with broad applications. However, existing methods face two key limitations: (i) an incomplete…

Data Structures and Algorithms · Computer Science 2025-09-03 Lingkai Meng , Long Yuan , Xuemin Lin , Wenjie Zhang , Ying Zhang

Hypergraphs are a useful abstraction for modeling multiway relationships in data, and hypergraph clustering is the task of detecting groups of closely related nodes in such data. Graph clustering has been studied extensively, and there are…

Data Structures and Algorithms · Computer Science 2020-07-02 Nate Veldt , Austin R. Benson , Jon Kleinberg

The applicability of agglomerative clustering, for inferring both hierarchical and flat clustering, is limited by its scalability. Existing scalable hierarchical clustering methods sacrifice quality for speed and often lead to over-merging…

Genome assembly is a prominent problem studied in bioinformatics, which computes the source string using a set of its overlapping substrings. Classically, genome assembly uses assembly graphs built using this set of substrings to compute…

Data Structures and Algorithms · Computer Science 2024-09-24 Saumya Talera , Parth Bansal , Shabnam Khan , Shahbaz Khan

In the semi-streaming model for processing massive graphs, an algorithm makes multiple passes over the edges of a given $n$-vertex graph and is tasked with computing the solution to a problem using $O(n \cdot \text{polylog}(n))$ space.…

Data Structures and Algorithms · Computer Science 2023-12-21 Sepehr Assadi , Christian Konrad , Kheeran K. Naidu , Janani Sundaresan

Spectral clustering is a celebrated algorithm that partitions objects based on pairwise similarity information. While this approach has been successfully applied to a variety of domains, it comes with limitations. The reason is that there…

Statistics Theory · Mathematics 2018-05-24 Kwangjun Ahn , Kangwook Lee , Changho Suh

As the size $n$ of datasets become massive, many commonly-used clustering algorithms (for example, $k$-means or hierarchical agglomerative clustering (HAC) require prohibitive computational cost and memory. In this paper, we propose a…

This paper introduces a hierarchical clustering algorithm, the Clustroid Hierarchical Nearest Neighbor ($\mathrm{CHN}^2$), designed for datasets with a countably infinite number of points. The method builds clusters across successive levels…

Probability · Mathematics 2025-11-17 Sayeh Khaniha , François Baccelli

In data stream clustering, systematic theory of stream clustering algorithms remains relatively scarce. Recently, density-based methods have gained attention. However, existing algorithms struggle to simultaneously handle arbitrarily…

Machine Learning · Computer Science 2026-05-07 Qifen Zeng , Haomin Bao , Yuanzhuo Hu , Zirui Zhang , Yuheng Zheng , Luosheng Wen

We study streaming algorithms for proportionally fair clustering, a notion originally suggested by Chierichetti et. al. (2017), in the sliding window model. We show that although there exist efficient streaming algorithms in the…

Data Structures and Algorithms · Computer Science 2025-03-10 Vincent Cohen-Addad , Shaofeng H. -C. Jiang , Qiaoyuan Yang , Yubo Zhang , Samson Zhou

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

Hierarchical clustering is a critical task in numerous domains. Many approaches are based on heuristics and the properties of the resulting clusterings are studied post hoc. However, in several applications, there is a natural cost function…

A single-commodity congestion approximator for a graph is a compact data structure that approximately predicts the edge congestion required to route any set of single-commodity flow demands in a network. A hierarchical congestion…

Data Structures and Algorithms · Computer Science 2025-12-22 Monika Henzinger , Robin Münk , Harald Räcke

Hierarchical Clustering is a popular tool for understanding the hereditary properties of a data set. Such a clustering is actually a sequence of clusterings that starts with the trivial clustering in which every data point forms its own…

Data Structures and Algorithms · Computer Science 2022-05-04 Anna Arutyunova , Heiko Röglin

We consider the problem of finding a minimum cut of a weighted graph presented as a single-pass stream. While graph sparsification in streams has been intensively studied, the specific application of finding minimum cuts in streams is less…

Data Structures and Algorithms · Computer Science 2024-12-09 Matthew Ding , Alexandro Garces , Jason Li , Honghao Lin , Jelani Nelson , Vihan Shah , David P. Woodruff

We present a structural clustering algorithm for large-scale datasets of small labeled graphs, utilizing a frequent subgraph sampling strategy. A set of representatives provides an intuitive description of each cluster, supports the…

Databases · Computer Science 2016-10-03 Till Schäfer , Petra Mutzel

Spectral clustering methodologies, when extended to accommodate signed graphs, have encountered notable limitations in effectively encapsulating inherent grouping relationships. Recent findings underscore a substantial deterioration in the…

Social and Information Networks · Computer Science 2025-01-15 Muhieddine Shebaro , Lucas Rusnak , Martin Burtscher , Jelena Tešić

Hierarchical Clustering has been studied and used extensively as a method for analysis of data. More recently, Dasgupta [2016] defined a precise objective function. Given a set of $n$ data points with a weight function $w_{i,j}$ for each…

Data Structures and Algorithms · Computer Science 2021-11-15 Mirmahdi Rahgoshay , Mohammad R. Salavatipour

We propose two one-pass streaming algorithms for the $\mathcal{NP}$-hard hypergraph matching problem. The first algorithm stores a small subset of potential matching edges in a stack using dual variables to select edges. It has an…

Data Structures and Algorithms · Computer Science 2025-07-09 Henrik Reinstädtler , S M Ferdous , Alex Pothen , Bora Uçar , Christian Schulz