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We present a new non-parametric method to quantify morphologies of galaxies based on a particular family of learning machines called support vector machines. The method, that can be seen as a generalization of the classical CAS…

Astrophysics · Physics 2009-11-13 M. Huertas-Company , D. Rouan , L. Tasca , G. Soucail , O. Le Fevre

Pattern-based file access is a fundamental but often under-documented aspect of computational research. The Python glob module provides a simple yet powerful way to search, filter, and ingest files using wildcard patterns, enabling scalable…

Software Engineering · Computer Science 2025-09-12 Sidney Shapiro

PyGOD is an open-source Python library for detecting outliers in graph data. As the first comprehensive library of its kind, PyGOD supports a wide array of leading graph-based methods for outlier detection under an easy-to-use,…

Machine Learning · Computer Science 2024-06-04 Kay Liu , Yingtong Dou , Xueying Ding , Xiyang Hu , Ruitong Zhang , Hao Peng , Lichao Sun , Philip S. Yu

PyamilySeq is a Python-based tool designed for interpretable gene clustering and pangenomic inference, supporting analyses at both species and genus levels. It facilitates the clustering of gene sequences into families based on sequence…

Genomics · Quantitative Biology 2024-07-30 Nicholas J. Dimonaco

We consider the problem of retrieving objects from image data and learning to classify them into meaningful semantic categories with minimal supervision. To that end, we propose a fully differentiable unsupervised deep clustering approach…

Computer Vision and Pattern Recognition · Computer Science 2018-07-25 Steven Hickson , Anelia Angelova , Irfan Essa , Rahul Sukthankar

We present the PPAK Integral Field Spectroscopy (IFS) Nearby Galaxies Survey: PINGS, a 2-dimensional spectroscopic mosaicking of 17 nearby disk galaxies in the optical wavelength range. This project represents the first attempt to obtain…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-18 F. F. Rosales-Ortega , R. C. Kennicutt , S. F. Sanchez , A. I. Diaz , A. Pasquali , B. D. Johnson , C. N. Hao

Computer simulation has become one of the most important tools in scientific research in many disciplines. Benefiting from the dynamical trajectories regulated by versatile interatomic interactions, various material properties can be…

Materials Science · Physics 2024-11-28 Y. -C. Hu , J. Tian

The analysis of experimental results with Python often requires writing many code scripts which all need access to the same set of functions. In a common field of research, this set will be nearly the same for many users. The qspec Python…

Computational Physics · Physics 2025-03-18 Patrick Müller , Wilfried Nörtershäuser

Context: The huge and still rapidly growing amount of galaxies in modern sky surveys raises the need of an automated and objective classification method. Unsupervised learning algorithms are of particular interest, since they discover…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-18 Rene Andrae , Peter Melchior , Matthias Bartelmann

This paper introduces Colossus, a public, open-source python package for calculations related to cosmology, the large-scale structure (LSS) of matter in the universe, and the properties of dark matter halos. The code is designed to be fast…

Cosmology and Nongalactic Astrophysics · Physics 2018-12-20 Benedikt Diemer

Upcoming large astronomical surveys are expected to capture an unprecedented number of strong gravitational lensing systems. Deep learning is emerging as a promising practical tool for the detection and quantification of these galaxy-scale…

Multiplexed immunofluorescence microscopy captures detailed measurements of spatially resolved, multiple biomarkers simultaneously, revealing tissue composition and cellular interactions in situ among single cells. The growing scale and…

Software Engineering · Computer Science 2025-06-03 Fang Liu , Rui He , Andrei Bombin , Ahmad B. Abdallah , Omar Eldaghar , Tommy R. Sheeley , Sam E. Ying , George Zaki

New tools are needed to handle the growth of data in astrophysics delivered by recent and upcoming surveys. We aim to build open-source, light, flexible, and interactive software designed to visualize extensive three-dimensional (3D)…

Instrumentation and Methods for Astrophysics · Physics 2017-04-26 M. Argudo-Fernández , S. Duarte Puertas , J. E. Ruiz , J. Sabater , S. Verley , G. Bergond

GALSIM is a collaborative, open-source project aimed at providing an image simulation tool of enduring benefit to the astronomical community. It provides a software library for generating images of astronomical objects such as stars and…

We present CONAN (COde for exoplaNet ANalysis), an open-source Python package for comprehensive analyses of exoplanetary systems. It provides a unified Bayesian framework to simultaneously analyze diverse exoplanet datasets to derive global…

Instrumentation and Methods for Astrophysics · Physics 2025-08-29 Babatunde Akinsanmi , Monika Lendl , Andreas Krenn

astroquery is a collection of tools for requesting data from databases hosted on remote servers with interfaces exposed on the internet, including those with web pages but without formal application program interfaces (APIs). These tools…

Few-shot learning is a promising way for reducing the label cost in new categories adaptation with the guidance of a small, well labeled support set. But for few-shot semantic segmentation, the pixel-level annotations of support images are…

Computer Vision and Pattern Recognition · Computer Science 2023-11-27 Jing Wang , Yuang Liu , Qiang Zhou , Fan Wang

A fundamental bimodality of galaxies in the local Universe is apparent in many of the features used to describe them. Multiple sub-populations exist within this framework, each representing galaxies following distinct evolutionary pathways.…

PyOD is an open-source Python toolbox for performing scalable outlier detection on multivariate data. Uniquely, it provides access to a wide range of outlier detection algorithms, including established outlier ensembles and more recent…

Machine Learning · Computer Science 2019-06-12 Yue Zhao , Zain Nasrullah , Zheng Li

We present a convenient, all-in-one framework for the scientific analysis of fully reduced, (integral-field) spectroscopic data. The GIST pipeline (Galaxy IFU Spectroscopy Tool) is entirely written in Python3 and conducts all steps from the…