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We introduce pygrank, an open source Python package to define, run and evaluate node ranking algorithms. We provide object-oriented and extensively unit-tested algorithm components, such as graph filters, post-processors, measures,…

Machine Learning · Computer Science 2021-10-19 Emmanouil Krasanakis , Symeon Papadopoulos , Ioannis Kompatsiaris , Andreas Symeonidis

We present Paicos, a new object-oriented Python package for analyzing simulations performed with Arepo. Paicos strives to reduce the learning curve for students and researchers getting started with Arepo simulations. As such, Paicos…

Instrumentation and Methods for Astrophysics · Physics 2024-04-24 Thomas Berlok , Léna Jlassi , Ewald Puchwein , Troels Haugbølle

We present Glyph - a Python package for genetic programming based symbolic regression. Glyph is designed for usage let by numerical simulations let by real world experiments. For experimentalists, glyph-remote provides a separation of…

Mathematical Software · Computer Science 2018-03-22 Markus Quade , Julien Gout , Markus Abel

We describe Ganalyzer, a model-based tool that can automatically analyze and classify galaxy images. Ganalyzer works by separating the galaxy pixels from the background pixels, finding the center and radius of the galaxy, generating the…

Instrumentation and Methods for Astrophysics · Physics 2015-05-28 Lior Shamir

We present a new Python pipeline for processing data from astronomical long-slit spectroscopy observations recorded with CCD detectors. The pipeline is designed to aim for simplicity, manual execution, transparency and robustness. The goal…

Instrumentation and Methods for Astrophysics · Physics 2025-04-02 Kostas Valeckas , Johan Peter Uldall Fynbo , Jens-Kristian Krogager , Kasper Elm Heintz

We developed a Python based framework for astronomical image processing and analysis. Astronomical image loading, normalizing, stacking, and filtering processes represent visible range images from grayscale. Besides, the blending process…

Instrumentation and Methods for Astrophysics · Physics 2024-10-10 Tanmoy Bhowmik , MD Fardin Islam , Kazi Nusrat Tasneem , Rantideb Roy , Rownok Shahariar

We introduce pymovements: a Python package for analyzing eye-tracking data that follows best practices in software development, including rigorous testing and adherence to coding standards. The package provides functionality for key…

We present astroplan - an open source, open development, Astropy affiliated package for ground-based observation planning and scheduling in Python. astroplan is designed to provide efficient access to common observational quantities such as…

Astronomical images often have regions with missing or unwanted information, such as bad pixels, bad columns, cosmic rays, masked objects, or residuals from imperfect model subtractions. In certain situations it can be essential, or…

Instrumentation and Methods for Astrophysics · Physics 2024-02-06 Pieter van Dokkum , Imad Pasha

A Materials Project based open-source Python tool, MPInterfaces, has been developed to automate the high-throughput computational screening and study of interfacial systems. The framework encompasses creation and manipulation of interface…

Medical image analysis plays a key role in precision medicine as it allows the clinicians to identify anatomical abnormalities and it is routinely used in clinical assessment. Data curation and pre-processing of medical images are critical…

Image and Video Processing · Electrical Eng. & Systems 2024-07-19 Sergey Primakov , Elizaveta Lavrova , Zohaib Salahuddin , Henry C Woodruff , Philippe Lambin

We introduce Geomstats, an open-source Python toolbox for computations and statistics on nonlinear manifolds, such as hyperbolic spaces, spaces of symmetric positive definite matrices, Lie groups of transformations, and many more. We…

Galaxies of rare morphology are of paramount scientific interest, as they carry important information about the past, present, and future universe. Once a rare galaxy is identified, studying it more effectively requires a set of galaxies of…

Instrumentation and Methods for Astrophysics · Physics 2017-01-04 Lior Shamir

In recent years, large scale data intensive astronomical surveys have resulted in more detailed images being produced than scientists can manually classify. Even attempts to crowd-source this work will soon be outpaced by the large amount…

Machine Learning · Computer Science 2022-09-13 Ezra Fielding , Clement N. Nyirenda , Mattia Vaccari

We find ourselves on the brink of an exciting era in observational astrophysics, driven by groundbreaking facilities like JWST, Euclid, Rubin, Roman, SKA, or ELT. Simultaneously, computational astrophysics has shown significant strides,…

Models can be built directly from input and output data trough a process known as system identification. The Nonlinear AutoRegressive with eXogenous inputs (NARMAX) models are among the most used mathematical representations in the area and…

Systems and Control · Electrical Eng. & Systems 2022-11-11 Henrique Carvalho de Castro , Bruno Henrique Groenner Barbosa

In this paper, we present and study a new image segmentation task, called Generalized Open-set Semantic Segmentation (GOSS). Previously, with the well-known open-set semantic segmentation (OSS), the intelligent agent only detects the…

Computer Vision and Pattern Recognition · Computer Science 2022-03-24 Jie Hong , Weihao Li , Junlin Han , Jiyang Zheng , Pengfei Fang , Mehrtash Harandi , Lars Petersson

The classification of galaxy morphologies is an important step in the investigation of theories of hierarchical structure formation. While human expert visual classification remains quite effective and accurate, it cannot keep up with the…

Instrumentation and Methods for Astrophysics · Physics 2023-10-13 Matthew J. Baumstark , Giuseppe Vinci

This paper proposes a novel self-supervised based Cut-and-Paste GAN to perform foreground object segmentation and generate realistic composite images without manual annotations. We accomplish this goal by a simple yet effective…

Computer Vision and Pattern Recognition · Computer Science 2023-04-06 Kunal Chaturvedi , Ali Braytee , Jun Li , Mukesh Prasad

Summary: Medical researchers obtain knowledge about the prevention and treatment of disability and disease using physical measurements and image data. To assist in this endeavor, feature extraction packages are available that are designed…

Computer Vision and Pattern Recognition · Computer Science 2024-05-27 Janan Arslan , Henri Chhoa , Ines Khemir , Romain Valabregue , Kurt K. Benke