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Neuroanatomical segmentation in magnetic resonance imaging (MRI) of the brain is a prerequisite for volume, thickness and shape measurements. This work introduces a new highly accurate and versatile method based on 3D convolutional neural…

Quantitative Methods · Quantitative Biology 2019-02-07 Philip Novosad , Vladimir Fonov , D. Louis Collins

Transformer-based neural networks have surpassed promising performance on many biomedical image segmentation tasks due to a better global information modeling from the self-attention mechanism. However, most methods are still designed for…

Computer Vision and Pattern Recognition · Computer Science 2023-02-02 Zheyuan Zhang , Ulas Bagci

Purpose: Conventional automated segmentation of the head anatomy in MRI distinguishes different brain and non-brain tissues based on image intensities and prior tissue probability maps (TPM). This works well for normal head anatomies, but…

Image and Video Processing · Electrical Eng. & Systems 2021-05-20 Lukas Hirsch , Yu Huang , Lucas C Parra

The task of automatically segmenting 3-D surfaces representing boundaries of objects is important for quantitative analysis of volumetric images, and plays a vital role in biomedical image analysis. Recently, graph-based methods with a…

Computer Vision and Pattern Recognition · Computer Science 2018-01-10 Abhay Shah , Michael Abramoff , Xiaodong Wu

Deep neural networks have evolved as the leading approach in 3D medical image segmentation due to their outstanding performance. However, the ever-increasing model size and computation cost of deep neural networks have become the primary…

Computer Vision and Pattern Recognition · Computer Science 2025-02-20 Boqian Wu , Qiao Xiao , Shiwei Liu , Lu Yin , Mykola Pechenizkiy , Decebal Constantin Mocanu , Maurice Van Keulen , Elena Mocanu

Accurate brain tumor segmentation is significant for clinical diagnosis and treatment but remains challenging due to tumor heterogeneity. Mamba-based State Space Models have demonstrated promising performance. However, despite their…

Computer Vision and Pattern Recognition · Computer Science 2026-03-06 Danish Ali , Ajmal Mian , Naveed Akhtar , Ghulam Mubashar Hassan

Robust and generalizable segmentation of brain tumors on multi-parametric magnetic resonance imaging (MRI) remains difficult because tumor types differ widely. The BraTS 2025 Lighthouse Challenge benchmarks segmentation methods on diverse…

Gliomas are the most common and aggressive among brain tumors, which cause a short life expectancy in their highest grade. Therefore, treatment assessment is a key stage to enhance the quality of the patients' lives. Recently, deep…

Image and Video Processing · Electrical Eng. & Systems 2020-04-07 Mehrdad Noori , Ali Bahri , Karim Mohammadi

Medical image segmentation has become an essential technique in clinical and research-oriented applications. Because manual segmentation methods are tedious, and fully automatic segmentation lacks the flexibility of human intervention or…

Image and Video Processing · Electrical Eng. & Systems 2019-04-24 Kevin Karsch , Qing He , Ye Duan

In this paper, a neural architecture search (NAS) framework is proposed for 3D medical image segmentation, to automatically optimize a neural architecture from a large design space. Our NAS framework searches the structure of each layer…

Machine Learning · Computer Science 2021-10-28 Sungwoong Kim , Ildoo Kim , Sungbin Lim , Woonhyuk Baek , Chiheon Kim , Hyungjoo Cho , Boogeon Yoon , Taesup Kim

Automated and accurate 3D medical image segmentation plays an essential role in assisting medical professionals to evaluate disease progresses and make fast therapeutic schedules. Although deep convolutional neural networks (DCNNs) have…

Image and Video Processing · Electrical Eng. & Systems 2020-12-01 Jianpeng Zhang , Yutong Xie , Yan Wang , Yong Xia

In this paper, we adopt 3D Convolutional Neural Networks to segment volumetric medical images. Although deep neural networks have been proven to be very effective on many 2D vision tasks, it is still challenging to apply them to 3D tasks…

Computer Vision and Pattern Recognition · Computer Science 2018-08-03 Zhuotun Zhu , Yingda Xia , Wei Shen , Elliot K. Fishman , Alan L. Yuille

Automatic brain tumor segmentation from multi-modal MRI remains challenging because volumetric models often incur substantial computational cost. This paper presents DALight-3D, a compact 3D U-Net variant that combines depthwise separable…

Computer Vision and Pattern Recognition · Computer Science 2026-05-07 Nand Kumar Mishra , Dhruv Mishra , Dr Manu Pratap Singh

Brain lesion volume measured on T2 weighted MRI images is a clinically important disease marker in multiple sclerosis (MS). Manual delineation of MS lesions is a time-consuming and highly operator-dependent task, which is influenced by…

Image and Video Processing · Electrical Eng. & Systems 2023-11-28 Hang Zhang , Jinwei Zhang , Qihao Zhang , Jeremy Kim , Shun Zhang , Susan A. Gauthier , Pascal Spincemaille , Thanh D. Nguyen , Mert R. Sabuncu , Yi Wang

This paper analyzes the use of 3D Convolutional Neural Networks for brain tumor segmentation in MR images. We address the problem using three different architectures that combine fine and coarse features to obtain the final segmentation. We…

Machine Learning · Statistics 2017-05-24 Adrià Casamitjana , Santi Puch , Asier Aduriz , Verónica Vilaplana

Fully convolutional neural networks have made promising progress in joint liver and liver tumor segmentation. Instead of following the debates over 2D versus 3D networks (for example, pursuing the balance between large-scale 2D pretraining…

Image and Video Processing · Electrical Eng. & Systems 2022-03-09 Shuxin Wang , Shilei Cao , Zhizhong Chai , Dong Wei , Kai Ma , Liansheng Wang , Yefeng Zheng

Since medical image data sets contain few samples and singular features, lesions are viewed as highly similar to other tissues. The traditional neural network has a limited ability to learn features. Even if a host of feature maps is…

Computer Vision and Pattern Recognition · Computer Science 2020-09-29 Hongfeng You , Long Yu , Shengwei Tian , Xiang Ma , Yan Xing , Xiaojie Ma

Automatic extraction of liver and tumor from CT volumes is a challenging task due to their heterogeneous and diffusive shapes. Recently, 2D and 3D deep convolutional neural networks have become popular in medical image segmentation tasks…

Computer Vision and Pattern Recognition · Computer Science 2020-12-14 Qiangguo Jin , Zhaopeng Meng , Changming Sun , Leyi Wei , Ran Su

In this work, we propose a multi-modal Convolutional Neural Network (CNN) approach for brain tumor segmentation. We investigate how to combine different modalities efficiently in the CNN framework.We adapt various fusion methods, which are…

Computer Vision and Pattern Recognition · Computer Science 2018-09-21 Mehmet Aygün , Yusuf Hüseyin Şahin , Gözde Ünal

Accurate and automatic segmentation of brain tumors in multi-parametric magnetic resonance imaging (mpMRI) is essential for quantitative measurements, which play an increasingly important role in clinical diagnosis and prognosis. The…

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