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We present a self-supervised framework that learns population-level codes for arbitrary ensembles of neural recordings at scale. We address key challenges in scaling models with neural time-series data, namely, sparse and variable electrode…

Our ability to use deep learning approaches to decipher neural activity would likely benefit from greater scale, in terms of both model size and datasets. However, the integration of many neural recordings into one unified model is…

Neurons can display highly variable dynamics. While such variability presumably supports the wide range of behaviors generated by the organism, their gene expressions are relatively stable in the adult brain. This suggests that neuronal…

Neurons and Cognition · Quantitative Biology 2023-11-07 Lu Mi , Trung Le , Tianxing He , Eli Shlizerman , Uygar Sümbül

When trained on language data, do transformers learn some arbitrary computation that utilizes the full capacity of the architecture or do they learn a simpler, tree-like computation, hypothesized to underlie compositional meaning systems…

Computation and Language · Computer Science 2022-11-07 Shikhar Murty , Pratyusha Sharma , Jacob Andreas , Christopher D. Manning

We show that a neural network originally designed for language processing can learn the dynamical rules of a stochastic system by observation of a single dynamical trajectory of the system, and can accurately predict its emergent behavior…

Statistical Mechanics · Physics 2022-02-18 Corneel Casert , Isaac Tamblyn , Stephen Whitelam

We propose a transformer architecture and training strategy for tree generation. The architecture processes data at multiple resolutions and has an hourglass shape, with middle layers processing fewer tokens than outer layers. Similar to…

Computer Vision and Pattern Recognition · Computer Science 2025-02-10 Hanxiao Wang , Biao Zhang , Jonathan Klein , Dominik L. Michels , Dongming Yan , Peter Wonka

Modeling of longitudinal cohort data typically involves complex temporal dependencies between multiple variables. There, the transformer architecture, which has been highly successful in language and vision applications, allows us to…

Neuronal systems need to process temporal signals. We here show how higher-order temporal (co-)fluctuations can be employed to represent and process information. Concretely, we demonstrate that a simple biologically inspired feedforward…

Neurons and Cognition · Quantitative Biology 2023-09-13 Sandra Nestler , Moritz Helias , Matthieu Gilson

In this communication we demonstrate that a deep artificial neural network based on a transformer architecture with self-attention layers can predict the long-time population dynamics of a quantum system coupled to a dissipative environment…

Quantum Physics · Physics 2024-10-16 Luis E. Herrera Rodríguez , Alexei A. Kananenka

Transformer architectures, capable of capturing sequential dependencies in the history of user interactions, have become the dominant approach in sequential recommender systems. Despite their success, such models consider sequence elements…

Information Retrieval · Computer Science 2026-03-02 Artur Gimranov , Viacheslav Yusupov , Elfat Sabitov , Tatyana Matveeva , Anton Lysenko , Ruslan Israfilov , Evgeny Frolov

Neural population activity is theorized to reflect an underlying dynamical structure. This structure can be accurately captured using state space models with explicit dynamics, such as those based on recurrent neural networks (RNNs).…

Neurons and Cognition · Quantitative Biology 2023-07-21 Joel Ye , Chethan Pandarinath

What sets timeseries analysis apart from other machine learning exercises is that time representation becomes a primary aspect of the experiment setup, as it must adequately represent the temporal relations that are relevant for the…

Machine Learning · Computer Science 2024-11-20 Natalia Koliou , Tatiana Boura , Stasinos Konstantopoulos , George Meramveliotakis , George Kosmadakis

Human language is known to exhibit a nested, hierarchical structure, allowing us to form complex sentences out of smaller pieces. However, many state-of-the-art neural networks models such as Transformers have no explicit hierarchical…

Computation and Language · Computer Science 2023-07-12 Nilay Patel , Jeffrey Flanigan

Two of the many trends in neural network research of the past few years have been (i) the learning of dynamical systems, especially with recurrent neural networks such as long short-term memory networks (LSTMs) and (ii) the introduction of…

Numerical Analysis · Mathematics 2024-11-15 Benedikt Brantner , Guillaume de Romemont , Michael Kraus , Zeyuan Li

We introduce a new neural architecture and an unsupervised algorithm for learning invariant representations from temporal sequence of images. The system uses two groups of complex cells whose outputs are combined multiplicatively: one that…

Neural and Evolutionary Computing · Computer Science 2010-06-03 Karo Gregor , Yann LeCun

The identification and modeling of time-varying systems is a fundamental challenge in signal processing and system identification. To address this challenge, we propose a class of time-varying state-space model (SSM) based neural networks…

Machine Learning · Computer Science 2026-05-18 Sanja Karilanova , Subhrakanti Dey , Ayça Özçelikkale

While deep learning has revolutionized research and applications in NLP and computer vision, this has not yet been the case for behavioral modeling and behavioral health applications. This is because the domain's datasets are smaller, have…

Machine Learning · Computer Science 2021-07-14 Mike A. Merrill , Tim Althoff

Learning interpretable representations of neural dynamics at a population level is a crucial first step to understanding how observed neural activity relates to perception and behavior. Models of neural dynamics often focus on either…

Machine Learning · Statistics 2025-01-13 Noga Mudrik , Yenho Chen , Eva Yezerets , Christopher J. Rozell , Adam S. Charles

The human mind effortlessly simulates the movements of objects governed by the laws of physics, such as a fluttering, or a waving flag under wind force, without understanding the underlying physics. This suggests that human cognition can…

Computer Vision and Pattern Recognition · Computer Science 2024-08-29 Somnuk Phon-Amnuaisuk

Population-based learning paradigms, including evolutionary strategies, Population-Based Training (PBT), and recent model-merging methods, combine fast within-model optimisation with slower population-level adaptation. Despite their…

Machine Learning · Computer Science 2026-03-26 Giacomo Borghi , Hyesung Im , Lorenzo Pareschi
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