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We study the class of graphs known as k-trees through the lens of Joyal's theory of combinatorial species (and an equivariant extension known as '$\Gamma$-species' which incorporates data about 'structural' group actions). This culminates…

Combinatorics · Mathematics 2015-09-14 Andrew Gainer-Dewar

We study probability distributions over free algebras of trees. Probability distributions can be seen as particular (formal power) tree series [Berstel et al 82, Esik et al 03], i.e. mappings from trees to a semiring K . A widely studied…

Machine Learning · Computer Science 2008-07-21 François Denis , Amaury Habrard , Rémi Gilleron , Marc Tommasi , Édouard Gilbert

One approach to estimating a species tree from a collection of gene trees is to first estimate probabilities of clades from the gene trees, and then to construct the species tree from the estimated clade probabilities. While a greedy…

Populations and Evolution · Quantitative Biology 2012-11-14 Elizabeth S. Allman , James H. Degnan , John A. Rhodes

The aim of this paper is to provide an affirmative answer to a recent question by Bubeck and Linial on the local profile of trees. For a tree $T$, let $p^{(k)}_1(T)$ be the proportion of paths among all $k$-vertex subtrees (induced…

Combinatorics · Mathematics 2016-02-16 Éva Czabarka , László A. Székely , Stephan Wagner

We find surprisingly simple formulas for the limiting probability that the rank of a randomly selected vertex in a randomly selected phylogenetic tree or generalized phylogenetic tree is a given integer.

Combinatorics · Mathematics 2023-06-22 Miklós Bóna

We study the distribution of the number of leaves of the subtree chosen uniformly at random among all the subtrees of the critical branching process tree at extinction.

Probability · Mathematics 2023-05-08 Boris Pittel

Generating graphs from a target distribution is a significant challenge across many domains, including drug discovery and social network analysis. In this work, we introduce a novel graph generation method leveraging $K^2$-tree…

Machine Learning · Computer Science 2024-03-27 Yunhui Jang , Dongwoo Kim , Sungsoo Ahn

A tree is called k-ended tree if it has at most k leaves, where a leaf is a vertex of degree one. In this paper we prove that every 3-regular connected graph with n vertices such that n is greater than 8 has spanning sub tree with at most…

Combinatorics · Mathematics 2016-06-22 Hamed Ghasemian Zoeram , Daniel Yaqubi

Given a tree T, one can define the local mean at some subtree S to be the average order of subtrees containing S. It is natural to ask which subtree of order k achieves the maximal/minimal local mean among all the subtrees of the same order…

Combinatorics · Mathematics 2023-06-26 Ruoyu Wang

A procedure is described that makes use of the generating function of characters to obtain a new generating function $H$ giving the multiplicities of each weight in all the representations of a simple Lie algebra. The way to extract from…

Mathematical Physics · Physics 2015-09-30 Jose Fernandez Nunez , Wifredo Garcia Fuertes , Askold M. Perelomov

Recently Han obtained a general formula for the weight function corresponding to the expansion of a generating function in terms of hook lengths of binary trees. In this paper, we present formulas for k-ary trees, plane trees, plane…

Combinatorics · Mathematics 2009-03-20 William Y. C. Chen , Oliver X. Q. Gao , Peter L. Guo

Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…

Populations and Evolution · Quantitative Biology 2021-06-30 Thomas Wiehe

For all integers $k\geq 3$, we give an $O(n^4)$ time algorithm for the problem whose instance is a graph $G$ of girth at least $k$ together with $k$ vertices and whose question is "Does $G$ contains an induced subgraph containing the $k$…

Discrete Mathematics · Computer Science 2013-09-06 Wei Liu , Nicolas Trotignon

Consider the following process on a simple graph without isolated vertices: Order the edges randomly and keep an edge if and only if it contains a vertex which is not contained in some preceding edge. The resulting set of edges forms a…

Combinatorics · Mathematics 2017-09-12 Zhanar Berikkyzy , Steve Butler , Jay Cummings , Kristin Heysse , Paul Horn , Ruth Luo , Brent Moran

The rooted tree is an important data structure, and the subtree size, height, and depth are naturally defined attributes of every node. We consider the problem of the existence of a k-ary tree given a list of attribute sequences. We give…

Data Structures and Algorithms · Computer Science 2016-07-19 Akshar Varma

Using a generating function approach, the correlation coefficients of four different graph-theoretical indices, namely the number of independent vertex subsets, the number of matchings, the number of subtrees and the Wiener index, are…

Combinatorics · Mathematics 2007-05-23 Stephan Wagner

We prove a lower bound on the number of spanning two-forests in a graph, in terms of the number of vertices, edges, and spanning trees. This implies an upper bound on the average cut size of a random two-forest. The main tool is an identity…

Combinatorics · Mathematics 2023-08-09 Harry Richman , Farbod Shokrieh , Chenxi Wu

This paper considers the enumeration of ternary trees (i.e. rooted ordered trees in which each vertex has 0 or 3 children) avoiding a contiguous ternary tree pattern. We begin by finding recurrence relations for several simple tree…

Combinatorics · Mathematics 2011-12-30 Nathan Gabriel , Katherine Peske , Lara Pudwell , Samuel Tay

We study several enumeration problems connected to linear trees, a broad class which includes stars, paths, generalized stars, and caterpillars. We provide generating functions for counting the number of linear trees on $n$ vertices,…

Combinatorics · Mathematics 2020-03-23 Tanay Wakhare , Eric Wityk , Charles R. Johnson

Given a connected graph $G=(V,E)$, a set $S\subseteq V$ is a $k$-metric generator for $G$ if for any two different vertices $u,v\in V$, there exist at least $k$ vertices $w_1,...,w_k\in S$ such that $d_G(u,w_i)\ne d_G(v,w_i)$ for every…

Combinatorics · Mathematics 2015-10-28 Ismael G. Yero , Alejandro Estrada-Moreno , Juan A. Rodriguez-Velazquez