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Many real-world complex networks contain a significant amount of structural redundancy, in which multiple vertices play identical topological roles. Such redundancy arises naturally from the simple growth processes which form and shape many…

Physics and Society · Physics 2020-08-05 Ben D. MacArthur , Rubén J. Sánchez-García

Links in most real networks often change over time. Such temporality of links encodes the ordering and causality of interactions between nodes and has a profound effect on network dynamics and function. Empirical evidences have shown that…

Social and Information Networks · Computer Science 2020-07-10 Disheng Tang , Wenbo Du , Louis Shekhtman , Yijie Wang , Shlomo Havlin , Xianbin Cao , Gang Yan

This paper studies the problem of learning causal structures from observational data. We reformulate the Structural Equation Model (SEM) with additive noises in a form parameterized by binary graph adjacency matrix and show that, if the…

Machine Learning · Computer Science 2022-01-11 Ignavier Ng , Shengyu Zhu , Zhuangyan Fang , Haoyang Li , Zhitang Chen , Jun Wang

Identifying critical nodes and links in graphs is a crucial task. These nodes/links typically represent critical elements/communication links that play a key role in a system's performance. However, a majority of the methods available in…

Social and Information Networks · Computer Science 2022-05-31 Sai Munikoti , Laya Das , Balasubramaniam Natarajan

Contagion processes are strongly linked to the network structures on which they propagate, and learning these structures is essential for understanding and intervention on complex network processes such as epidemics and (mis)information…

Social and Information Networks · Computer Science 2019-08-12 Caitlin Gray , Lewis Mitchell , Matthew Roughan

Biological systems and processes are networks of complex nonlinear regulatory interactions between nucleic acids, proteins, and metabolites. A natural way in which to represent these interaction networks is through the use of a graph. In…

Molecular Networks · Quantitative Biology 2023-01-04 Jacob Rast

We propose a data-driven approach to represent neuronal network dynamics as a Probabilistic Graphical Model (PGM). Our approach learns the PGM structure by employing dimension reduction to network response dynamics evoked by stimuli applied…

Neurons and Cognition · Quantitative Biology 2017-11-02 Hexuan Liu , Jimin Kim , Eli Shlizerman

Network or graph structures are ubiquitous in the study of complex systems. Often, we are interested in complexity trends of these system as it evolves under some dynamic. An example might be looking at the complexity of a food web as…

Information Theory · Computer Science 2007-07-16 Russell K. Standish

In many applications, such as those arising from the field of cellular networks, it is often desired to determine the interaction (graph) structure of a set of differential equations, using as data measured sensitivities. This note proposes…

Biological Physics · Physics 2007-05-23 Boris N. Kholodenko , Eduardo D. Sontag

In this paper, the relationship between probabilistic graphical models, in particular Bayesian networks, and causal diagrams, also called structural causal models, is studied. Structural causal models are deterministic models, based on…

Artificial Intelligence · Computer Science 2026-04-24 Peter J. F. Lucas , Eleonora Zullo , Fabio Stella

In this paper, we extend the analysis of random Kronecker graphs to multi-dimensional networks represented as tensors, enabling a more detailed and nuanced understanding of complex network structures. We decompose the adjacency tensor of…

Numerical Analysis · Mathematics 2025-06-30 Sanaa Khobizy

Modern communication networks are inherently complex in nature. First of all, they have a large number of heterogeneous components. Secondly, their connectivity is extremely dynamic. Nodes can come and go, links can be removed and added…

Social and Information Networks · Computer Science 2017-08-08 Bisma S. Khan , Muaz A. Niazi

We propose a novel architecture for Graph Neural Networks that is inspired by the idea behind Tree Kernels of measuring similarity between trees by taking into account their common substructures, named fragments. By imposing a series of…

Computation and Language · Computer Science 2021-10-04 Federico Ruggeri , Marco Lippi , Paolo Torroni

Causal generative models provide a principled framework for answering observational, interventional, and counterfactual queries from observational data. However, many deep causal models rely on highly expressive architectures with opaque…

Machine Learning · Computer Science 2026-03-23 Alejandro Almodóvar , Mar Elizo , Patricia A. Apellániz , Santiago Zazo , Juan Parras

We present a tensor network model (TNM) for forecasting nonlinear and chaotic dynamics, bridging quantum many-body methods with classical complex systems. The TNM leverages hierarchical tensor contractions to encode non-Markovian temporal…

Quantum Physics · Physics 2025-11-13 Jia-Bin You , Jian Feng Kong , Jun Ye

The study of causal structure in complex systems has gained increasing attention, with many recent studies exploring causal networks that capture cause-effect relationships across diverse fields. Despite increasing empirical evidence…

Physics and Society · Physics 2025-02-26 Jiazhen Liu , Kunal Tamang , Dashun Wang , Chaoming Song

At the core of understanding dynamical systems is the ability to maintain and control the systems behavior that includes notions of robustness, heterogeneity, or regime-shift detection. Recently, to explore such functional properties, a…

Systems and Control · Computer Science 2019-10-08 Bipul Islam , Ji Liu , Romeil Sandhu

Quantifying the relations (e.g., similarity) between complex networks paves the way for studying the latent information shared across networks. However, fundamental relation metrics are not well-defined between networks. As a compromise,…

Social and Information Networks · Computer Science 2023-07-21 Yang Tian , Hedong Hou , Guangzheng Xu , Ziyang Zhang , Pei Sun

Granger causality (GC) is undoubtedly the most widely used method to infer cause-effect relations from observational time series. Several nonlinear alternatives to GC have been proposed based on kernel methods. We generalize kernel Granger…

Chaotic Dynamics · Physics 2020-12-10 Diego Bueso , Maria Piles , Gustau Camps-Valls

Directed networks are pervasive both in nature and engineered systems, often underlying the complex behavior observed in biological systems, microblogs and social interactions over the web, as well as global financial markets. Since their…

Machine Learning · Statistics 2017-06-07 Yanning Shen , Brian Baingana , Georgios B. Giannakis
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