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This thesis focuses on representation learning for sequence data over time or space, aiming to improve downstream sequence prediction tasks by using the learned representations. Supervised learning has been the most dominant approach for…

Audio and Speech Processing · Electrical Eng. & Systems 2023-08-02 Qingming Tang

Neural methods of molecule property prediction require efficient encoding of structure and property relationship to be accurate. Recent work using graph algorithms shows limited generalization in the latent molecule encoding space. We build…

Quantitative Methods · Quantitative Biology 2020-11-26 Prateeth Nayak , Andrew Silberfarb , Ran Chen , Tulay Muezzinoglu , John Byrnes

Reasoning over an instance composed of a set of vectors, like a point cloud, requires that one accounts for intra-set dependent features among elements. However, since such instances are unordered, the elements' features should remain…

Machine Learning · Computer Science 2020-08-07 Yang Li , Haidong Yi , Christopher M. Bender , Siyuan Shan , Junier B. Oliva

Convolutional Neural Networks define an exceptionally powerful class of models, but are still limited by the lack of ability to be spatially invariant to the input data in a computationally and parameter efficient manner. In this work we…

Computer Vision and Pattern Recognition · Computer Science 2016-02-05 Max Jaderberg , Karen Simonyan , Andrew Zisserman , Koray Kavukcuoglu

Despite success in many domains, neural models struggle in settings where train and test examples are drawn from different distributions. In particular, in contrast to humans, conventional sequence-to-sequence (seq2seq) models fail to…

Computation and Language · Computer Science 2021-10-28 Bailin Wang , Mirella Lapata , Ivan Titov

In machine translation (MT) that involves translating between two languages with significant differences in word order, determining the correct word order of translated words is a major challenge. The dependency parse tree of a source…

Computation and Language · Computer Science 2017-02-16 Christian Hadiwinoto , Hwee Tou Ng

For many real-world classification problems, e.g., sentiment classification, most existing machine learning methods are biased towards the majority class when the Imbalance Ratio (IR) is high. To address this problem, we propose a set…

Information Retrieval · Computer Science 2021-04-14 Yang Gao , Yi-Fan Li , Yu Lin , Charu Aggarwal , Latifur Khan

Transformers are powerful for sequence modeling. Nearly all state-of-the-art language models and pre-trained language models are based on the Transformer architecture. However, it distinguishes sequential tokens only with the token position…

Computation and Language · Computer Science 2020-12-17 He Bai , Peng Shi , Jimmy Lin , Yuqing Xie , Luchen Tan , Kun Xiong , Wen Gao , Ming Li

Unsupervised single-channel overlapped speech recognition is one of the hardest problems in automatic speech recognition (ASR). Permutation invariant training (PIT) is a state of the art model-based approach, which applies a single neural…

Computation and Language · Computer Science 2017-12-27 Zhehuai Chen , Jasha Droppo , Jinyu Li , Wayne Xiong

Sequence models such as transformers require inputs to be represented as one-dimensional sequences. In vision, this typically involves flattening images using a fixed row-major (raster-scan) order. While full self-attention is…

Machine Learning · Computer Science 2025-10-24 Declan Kutscher , David M. Chan , Yutong Bai , Trevor Darrell , Ritwik Gupta

Retrosynthesis prediction is one of the fundamental challenges in organic synthesis. The task is to predict the reactants given a core product. With the advancement of machine learning, computer-aided synthesis planning has gained…

Chemical Physics · Physics 2022-02-01 Yue Wan , Benben Liao , Chang-Yu Hsieh , Shengyu Zhang

Sequence-to-sequence models have achieved impressive results on various tasks. However, they are unsuitable for tasks that require incremental predictions to be made as more data arrives or tasks that have long input sequences and output…

Machine Learning · Computer Science 2016-08-08 Navdeep Jaitly , David Sussillo , Quoc V. Le , Oriol Vinyals , Ilya Sutskever , Samy Bengio

Recurrent Neural Networks were, until recently, one of the best ways to capture the timely dependencies in sequences. However, with the introduction of the Transformer, it has been proven that an architecture with only attention-mechanisms…

Machine Learning · Computer Science 2021-08-19 Radostin Cholakov , Todor Kolev

Artificial intelligence (AI) has revolutionized software engineering (SE) by enhancing software development efficiency. The advent of pre-trained models (PTMs) leveraging transfer learning has significantly advanced AI for SE. However,…

Software Engineering · Computer Science 2024-04-25 Zixiang Xian , Rubing Huang , Dave Towey , Chunrong Fang , Zhenyu Chen

Analyzing sequential data is crucial in many domains, particularly due to the abundance of data collected from the Internet of Things paradigm. Time series classification, the task of categorizing sequential data, has gained prominence,…

Machine Learning · Computer Science 2024-06-21 Venkata Ragavendra Vavilthota , Ranjith Ramanathan , Sathyanarayanan N. Aakur

Most of modern neural machine translation (NMT) models are based on an encoder-decoder framework with an attention mechanism. While they perform well on standard datasets, they can have trouble in translation of long inputs that are rare or…

Computation and Language · Computer Science 2026-03-31 Shuhei Kondo , Katsuhito Sudoh , Yuji Matsumoto

Neural machine translation (NMT) takes deterministic sequences for source representations. However, either word-level or subword-level segmentations have multiple choices to split a source sequence with different word segmentors or…

Computation and Language · Computer Science 2019-06-05 Fengshun Xiao , Jiangtong Li , Hai Zhao , Rui Wang , Kehai Chen

We propose methods to strengthen the invariance properties of representations obtained by contrastive learning. While existing approaches implicitly induce a degree of invariance as representations are learned, we look to more directly…

Machine Learning · Computer Science 2021-03-23 Adam Foster , Rattana Pukdee , Tom Rainforth

The self-attention mechanism in Transformer architecture, invariant to sequence order, necessitates positional embeddings to encode temporal order in time series prediction. We argue that this reliance on positional embeddings restricts the…

Machine Learning · Computer Science 2024-08-21 Yongbo Yu , Weizhong Yu , Feiping Nie , Xuelong Li

Transformer models have continuously expanded into all machine learning domains convertible to the underlying sequence-to-sequence representation, including tabular data. However, while ubiquitous, this representation restricts their…

Machine Learning · Computer Science 2025-07-24 Jakub Peleška , Gustav Šír
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