Related papers: Covering Sequences for $\ell$-Tuples
An Euler tour in a hypergraph $H$ is a closed walk that traverses each edge of $H$ exactly once, and an Euler family is a family of closed walks that jointly traverse each edge of $H$ exactly once. An $\ell$-covering $k$-hypergraph, for $2…
A De Bruijn cycle is a cyclic sequence in which every word of length $n$ over an alphabet $\mathcal{A}$ appears exactly once. De Bruijn tori are a two-dimensional analogue. Motivated by recent progress on universal partial cycles and words,…
This paper provides simple lower bounds on the number of iterations which is required for successful message-passing decoding of some important families of graph-based code ensembles (including low-density parity-check codes and variations…
A cut-down de Bruijn sequence is a cyclic string of length $L$, where $1 \leq L \leq k^n$, such that every substring of length $n$ appears at most once. Etzion [Theor. Comp. Sci 44 (1986)] gives an algorithm to construct binary cut-down de…
DNA labeling is a tool in molecular biology and biotechnology to visualize, detect, and study DNA at the molecular level. In this process, a DNA molecule is labeled by a set of specific patterns, referred to as labels, and is then imaged.…
The pattern $(k_1, k_2, \dots, k_\ell)$ is defined to have at least $k_1$ consecutive $1$'s followed by at least $k_2$ consecutive $2$'s, $\dots$, followed by at least $k_\ell$ consecutive $\ell$'s. By iteratively applying the method that…
A de Bruijn covering code is a q-ary string S so that every q-ary string is at most R symbol changes from some n-word appearing consecutively in S. We introduce these codes and prove that they can have length close to the smallest possible…
We introduce near triple arrays as binary row-column designs with at most two consecutive values for the replication numbers of symbols, for the intersection sizes of pairs of rows, pairs of columns and pairs of a row and a column. Near…
Recent work has demonstrated the catastrophic effects of poor cardinality estimates on query processing time. In particular, underestimating query cardinality can result in overly optimistic query plans which take orders of magnitude longer…
We study codes that can correct backtracking errors during nanopore sequencing. In this channel, a sequence of length $n$ over an alphabet of size $q$ is being read by a sliding window of length $\ell$, where from each window we obtain only…
Alanzi et al. (2022) investigated overpartition of a positive integer $n$ with $\ell$-regular non-overlined parts denoted by $\overline R_\ell^\ast (n)$, and proved some results for the case $\ell=3$. As extension to the results of Alanzi…
In the classic maximum coverage problem, we are given subsets $T_1, \dots, T_m$ of a universe $[n]$ along with an integer $k$ and the objective is to find a subset $S \subseteq [m]$ of size $k$ that maximizes $C(S) := |\cup_{i \in S} T_i|$.…
Every binary De~Bruijn sequence of order n satisfies a recursion 0=x_n+x_0+g(x_{n-1}, ..., x_1). Given a function f on (n-1) bits, let N(f; r) be the number of functions generating a De Bruijn sequence of order n which are obtained by…
A subset $B$ of the ring $\mathbb{Z}_n$ is referred to as a $\ell$-covering set if $\{ ab \pmod n | 0\leq a \leq \ell, b\in B\} = \mathbb{Z}_n$. We show that there exists a $\ell$-covering set of $\mathbb{Z}_n$ of size $O(\frac{n}{\ell}\log…
Given an integer $\ell\ge 1$, a $(1,\le \ell)$-identifying code in a digraph is a dominating subset $C$ of vertices such that all distinct subsets of vertices of cardinality at most $\ell$ have distinct closed in-neighbourhood within $C$.…
We study a fixed-window counting system in which integers are represented by words of constant length while the alphabet grows as needed. This viewpoint arises from De Bruijn sequences: for fixed order $n$, the reverse prefer-max sequence…
Let $T_\ell(n)$ denote the number of $\ell-$regular partition triples of $n$ and let $p_{\ell, 3}(n)$ enumerates the number of 2--color partition triples of $n$ where one of the colors appear only in parts that are multiples of $\ell$. In…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
A de Bruijn array code is a set of $r \times s$ binary doubly-periodic arrays such that each binary $n \times m$ matrix is contained exactly once as a window in one of the arrays. Such a set of arrays can be viewed as a two-dimensional…
For a positive integer $n$, let $B_{\ell_1,\dots,\ell_r}(n)$ denote the number of $(\ell_1,\ell_2,\cdots,\ell_r)$-regular multipartitions of $n$. If $\ell_1=\ell_2=\cdots=\ell_r=\ell$, then we denote $B_{\ell_1,\dots,\ell_r}(n)$ as…