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We introduce PubMedQA, a novel biomedical question answering (QA) dataset collected from PubMed abstracts. The task of PubMedQA is to answer research questions with yes/no/maybe (e.g.: Do preoperative statins reduce atrial fibrillation…

Computation and Language · Computer Science 2019-09-16 Qiao Jin , Bhuwan Dhingra , Zhengping Liu , William W. Cohen , Xinghua Lu

Medical multiple-choice question answering (MCQA) is particularly difficult. Questions may describe patient symptoms and ask for the correct diagnosis, which requires domain knowledge and complex reasoning. Standard language modeling…

Computation and Language · Computer Science 2023-03-14 Damien Sileo , Kanimozhi Uma , Marie-Francine Moens

Electronic Health Records (EHRs) provide vital contextual information to radiologists and other physicians when making a diagnosis. Unfortunately, because a given patient's record may contain hundreds of notes and reports, identifying…

The quest for seeking health information has swamped the web with consumers' health-related questions. Generally, consumers use overly descriptive and peripheral information to express their medical condition or other healthcare needs,…

Computation and Language · Computer Science 2022-06-16 Shweta Yadav , Deepak Gupta , Dina Demner-Fushman

Question answering (QA) models often rely on large-scale training datasets, which necessitates the development of a data generation framework to reduce the cost of manual annotations. Although several recent studies have aimed to generate…

Computation and Language · Computer Science 2023-02-07 Seongyun Lee , Hyunjae Kim , Jaewoo Kang

The financial domain frequently deals with large numbers of long documents that are essential for daily operations. Significant effort is put towards automating financial data analysis. However, a persistent challenge, not limited to the…

Computation and Language · Computer Science 2024-06-21 Viet Dac Lai , Michael Krumdick , Charles Lovering , Varshini Reddy , Craig Schmidt , Chris Tanner

Fact-centric question answering (QA) often requires access to multiple, heterogeneous, information sources. By jointly considering several sources like a knowledge base (KB), a text collection, and tables from the web, QA systems can…

Information Retrieval · Computer Science 2023-08-22 Philipp Christmann , Rishiraj Saha Roy , Gerhard Weikum

Scientific researchers need intensive information about datasets to effectively evaluate and develop theories and methodologies. The information needs regarding datasets are implicitly embedded in particular research tasks, rather than…

Computation and Language · Computer Science 2025-06-16 Junyong Lin , Lu Dai , Ruiqian Han , Yijie Sui , Ruilin Wang , Xingliang Sun , Qinglin Wu , Min Feng , Hao Liu , Hui Xiong

Brief Hospital Course (BHC) summaries are succinct summaries of an entire hospital encounter, embedded within discharge summaries, written by senior clinicians responsible for the overall care of a patient. Methods to automatically produce…

Computation and Language · Computer Science 2023-04-11 Thomas Searle , Zina Ibrahim , James Teo , Richard Dobson

Medical question-answering (QA) is a critical task for evaluating how effectively large language models (LLMs) encode clinical knowledge and assessing their potential applications in medicine. Despite showing promise on multiple-choice…

Computation and Language · Computer Science 2025-03-06 Guangfu Guo , Kai Zhang , Bryan Hoo , Yujun Cai , Xiaoqian Lu , Nanyun Peng , Yiwei Wang

Electronic Health Record (EHR) retrieval plays a pivotal role in various clinical tasks, but its development has been severely impeded by the lack of publicly available benchmarks. In this paper, we introduce a novel public EHR retrieval…

Information Retrieval · Computer Science 2025-04-09 Zhengyun Zhao , Hongyi Yuan , Jingjing Liu , Haichao Chen , Huaiyuan Ying , Songchi Zhou , Yue Zhong , Sheng Yu

Large language models (LLMs) show promise for clinical use. They are often evaluated using datasets such as MedQA. However, Many medical datasets, such as MedQA, rely on simplified Question-Answering (Q\A) that underrepresents real-world…

Computation and Language · Computer Science 2025-10-24 Yunpeng Xiao , Carl Yang , Mark Mai , Xiao Hu , Kai Shu

In this paper, we propose a modified version of the MedQA-USMLE dataset, named MEDQA-OPEN, which contains open-ended medical questions without options to mimic clinical scenarios, along with clinician-approved reasoned answers.…

Automatic summarization of natural language is a widely studied area in computer science, one that is broadly applicable to anyone who routinely needs to understand large quantities of information. For example, in the medical domain, recent…

Computation and Language · Computer Science 2020-05-21 Max Savery , Asma Ben Abacha , Soumya Gayen , Dina Demner-Fushman

Electronic health records (EHR) contain extensive structured and unstructured data, including tabular information and free-text clinical notes. Querying relevant patient information often requires complex database operations, increasing the…

Information Retrieval · Computer Science 2025-11-27 Mengliang ZHang

Clinicians spend a significant amount of time inputting free-form textual notes into Electronic Health Records (EHR) systems. Much of this documentation work is seen as a burden, reducing time spent with patients and contributing to…

Computation and Language · Computer Science 2018-08-09 Peter J. Liu

One of the challenges in large-scale information retrieval (IR) is to develop fine-grained and domain-specific methods to answer natural language questions. Despite the availability of numerous sources and datasets for answer retrieval,…

Computation and Language · Computer Science 2019-11-28 Asma Ben Abacha , Dina Demner-Fushman

Effective patient care in digital healthcare requires large language models (LLMs) that not only answer questions but also actively gather critical information through well-crafted inquiries. This paper introduces HealthQ, a novel framework…

Computation and Language · Computer Science 2025-02-26 Ziyu Wang , Hao Li , Di Huang , Hye-Sung Kim , Chae-Won Shin , Amir M. Rahmani

Pre-consultation is a critical component of effective healthcare delivery. However, generating comprehensive pre-consultation questionnaires from complex, voluminous Electronic Medical Records (EMRs) is a challenging task. Direct Large…

Artificial Intelligence · Computer Science 2025-08-04 Ruiqing Ding , Qianfang Sun , Yongkang Leng , Hui Yin , Xiaojian Li

Question answering and conversational systems are often baffled and need help clarifying certain ambiguities. However, limitations of existing datasets hinder the development of large-scale models capable of generating and utilising…

Computation and Language · Computer Science 2020-06-12 Vaibhav Kumar , Alan W. black