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Both natural and synthetic chemical systems not only exhibit a range of non-trivial dynamics, but also transition between qualitatively different dynamical behaviours as environmental parameters change. Such transitions are called…

Molecular Networks · Quantitative Biology 2026-02-03 Alexander Dack , Tomislav Plesa , Thomas E. Ouldridge

Spiking Neural Networks (SNNs) have a greater potential for modeling time series data than Artificial Neural Networks (ANNs), due to their inherent neuron dynamics and low energy consumption. However, it is difficult to demonstrate their…

Neural and Evolutionary Computing · Computer Science 2024-01-22 Chenxi Sun , Hongyan Li , Moxian Song , Derun Can , Shenda Hong

Predicting structural and energetic properties of a molecular system is one of the fundamental tasks in molecular simulations, and it has use cases in chemistry, biology, and medicine. In the past decade, the advent of machine learning…

Chemical Physics · Physics 2022-08-23 Sajjad Heydari , Stefano Raniolo , Lorenzo Livi , Vittorio Limongelli

In neural network's Literature, Hebbian learning traditionally refers to the procedure by which the Hopfield model and its generalizations store archetypes (i.e., definite patterns that are experienced just once to form the synaptic…

Disordered Systems and Neural Networks · Physics 2024-02-21 Francesco Alemanno , Miriam Aquaro , Ido Kanter , Adriano Barra , Elena Agliari

Humans possess the capability to reason at an abstract level and to structure information into abstract categories, but the underlying neural processes have remained unknown. Experimental evidence has recently emerged for the organization…

Neurons and Cognition · Quantitative Biology 2022-04-05 Michael G. Müller , Christos H. Papadimitriou , Wolfgang Maass , Robert Legenstein

In many complex systems, elementary units live in a chaotic environment and need to adapt their strategies to perform a task, by extracting information from the environment and controlling the feedback loop on it. One of the main example of…

Disordered Systems and Neural Networks · Physics 2023-09-26 Samantha J. Fournier , Pierfrancesco Urbani

While software implementations of neural networks have driven significant advances in computation, the von Neumann architecture imposes fundamental limitations on speed and energy efficiency. Neuromorphic networks, with structures inspired…

Deep learning networks generally use non-biological learning methods. By contrast, networks based on more biologically plausible learning, such as Hebbian learning, show comparatively poor performance and difficulties of implementation.…

Neural and Evolutionary Computing · Computer Science 2021-11-02 Thomas Miconi

We present a novel framework for chemical learning based on Competitive Dimerization Networks (CDNs) - systems in which multiple molecular species, e.g. proteins or DNA/RNA oligomers, reversibly bind to form dimers. We show that these…

Statistical Mechanics · Physics 2025-06-18 Alexei V. Tkachenko , Bortolo Matteo Mognetti , Sergei Maslov

Artificial spiking neural networks have found applications in areas where the temporal nature of activation offers an advantage, such as time series prediction and signal processing. To improve their efficiency, spiking architectures often…

Spiking Neural Networks (SNNs) are highly energy-efficient due to event-driven, sparse computation, but their training is challenged by spike non-differentiability and trade-offs among performance, efficiency, and biological plausibility.…

Neural and Evolutionary Computing · Computer Science 2026-01-30 Zihan Huang , Zijie Xu , Yihan Huang , Shanshan Jia , Tong Bu , Yiting Dong , Wenxuan Liu , Jianhao Ding , Zhaofei Yu , Tiejun Huang

The Chemical Reaction Network (CRN) is a well-studied model that describes the interaction of molecules in well-mixed solutions. In 2014, Qian and Winfree [22] proposed the abstract surface chemical reaction network model (sCRN), which…

Computational Complexity · Computer Science 2024-06-14 Yi-Xuan Lee , Ho-Lin Chen

Hebbian meta-learning has recently shown promise to solve hard reinforcement learning problems, allowing agents to adapt to some degree to changes in the environment. However, because each synapse in these approaches can learn a very…

Neural and Evolutionary Computing · Computer Science 2021-06-24 Rasmus Berg Palm , Elias Najarro , Sebastian Risi

The ability of humans for lifelong learning is an inspiration for deep learning methods and in particular for continual learning. In this work, we apply Hebbian learning, a biologically inspired learning process, to sound classification. We…

Audio and Speech Processing · Electrical Eng. & Systems 2026-04-21 Riccardo Casciotti , Francesco De Santis , Alberto Antonietti , Annamaria Mesaros

Humans excel at continually acquiring, consolidating, and retaining information from an ever-changing environment, whereas artificial neural networks (ANNs) exhibit catastrophic forgetting. There are considerable differences in the…

Neural and Evolutionary Computing · Computer Science 2023-04-17 Fahad Sarfraz , Elahe Arani , Bahram Zonooz

Spiking neural networks (SNNs) are being explored in an attempt to mimic brain's capability to learn and recognize at low power. Crossbar architecture with highly scalable Resistive RAM or RRAM array serving as synaptic weights and neuronal…

Neural and Evolutionary Computing · Computer Science 2018-08-08 Aditya Shukla , Udayan Ganguly

Chemical reaction networks (CRNs) provide a convenient language for modelling a broad variety of biological systems. These models are commonly studied with respect to the time series they generate in deterministic or stochastic simulations.…

Molecular Networks · Quantitative Biology 2019-07-11 Ozan Kahramanoğulları

Over the last few years, large neural generative models, capable of synthesizing semantically rich passages of text or producing complex images, have recently emerged as a popular representation of what has come to be known as ``generative…

Neurons and Cognition · Quantitative Biology 2023-11-07 Alexander Ororbia , Mary Alexandria Kelly

Embedding computation in biochemical environments incompatible with traditional electronics is expected to have wide-ranging impact in synthetic biology, medicine, nanofabrication and other fields. Natural biochemical systems are typically…

Machine Learning · Computer Science 2022-06-15 Marko Vasic , Cameron Chalk , Austin Luchsinger , Sarfraz Khurshid , David Soloveichik

The state-of-the art machine learning approach to training deep neural networks, backpropagation, is implausible for real neural networks: neurons need to know their outgoing weights; training alternates between a bottom-up forward pass…

Machine Learning · Computer Science 2020-10-26 Roman Pogodin , Peter E. Latham
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