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Graph neural networks are currently leading the performance charts in learning-based molecule property prediction and classification. Computational chemistry has, therefore, become the a prominent testbed for generic graph neural networks,…

Machine Learning · Computer Science 2020-02-04 Eliya Nachmani , Lior Wolf

The irreducible complexity of natural phenomena has led Graph Neural Networks to be employed as a standard model to perform representation learning tasks on graph-structured data. While their capacity to capture local and global patterns is…

Machine Learning · Computer Science 2024-02-13 Lorenzo Giusti

Deploying graph neural networks (GNNs) on whole-graph classification or regression tasks is known to be challenging: it often requires computing node features that are mindful of both local interactions in their neighbourhood and the global…

Machine Learning · Computer Science 2022-12-22 Andreea Deac , Marc Lackenby , Petar Veličković

Graph neural networks (GNNs) emerge as a powerful family of representation learning models on graphs. To derive node representations, they utilize a global model that recursively aggregates information from the neighboring nodes. However,…

Machine Learning · Computer Science 2021-11-04 Zemin Liu , Yuan Fang , Chenghao Liu , Steven C. H. Hoi

We address two fundamental questions about graph neural networks (GNNs). First, we prove that several important graph properties cannot be computed by GNNs that rely entirely on local information. Such GNNs include the standard message…

Machine Learning · Computer Science 2020-02-17 Vikas K. Garg , Stefanie Jegelka , Tommi Jaakkola

Message-passing has proved to be an effective way to design graph neural networks, as it is able to leverage both permutation equivariance and an inductive bias towards learning local structures in order to achieve good generalization.…

Machine Learning · Computer Science 2020-10-26 Clement Vignac , Andreas Loukas , Pascal Frossard

Complex systems of interacting components often can be modeled by a simple graph $\mathcal{G}$ that consists of a set of $n$ nodes and a set of $m$ edges. Such a graph can be represented by an adjacency matrix $A\in\R^{n\times n}$, whose…

Physics and Society · Physics 2025-09-17 Silvia Noschese , Lothar Reichel

A prominent paradigm for graph neural networks is based on the message-passing framework. In this framework, information communication is realized only between neighboring nodes. The challenge of approaches that use this paradigm is to…

Machine Learning · Computer Science 2023-09-18 Maysam Behmanesh , Maximilian Krahn , Maks Ovsjanikov

The search is based on the preliminary transformation of matrices or adjacency lists traditionally used in the study of graphs into projections cleared of redundant information (refined) followed by the selection of the desired shortest…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-16 V. A. Melent'ev

Graph Neural Networks (GNNs) set the state-of-the-art in representation learning for graph-structured data. They are used in many domains, from online social networks to complex molecules. Most GNNs leverage the message-passing paradigm and…

Machine Learning · Computer Science 2025-03-06 Tuğrul Hasan Karabulut , İnci M. Baytaş

One model of message delivery in a computer network is based on labelling each edge by a subset of a (reasonably small) universal set, and then encoding a path as the union of the labels of its edges. Earlier work suggested using random…

Combinatorics · Mathematics 2018-06-26 Gokce Caylak Kayaturan , Alexei Vernitski

Graph neural networks have recently achieved great successes in predicting quantum mechanical properties of molecules. These models represent a molecule as a graph using only the distance between atoms (nodes). They do not, however,…

Machine Learning · Computer Science 2022-04-06 Johannes Gasteiger , Janek Groß , Stephan Günnemann

This paper studies asynchronous message passing (AMP), a new paradigm for applying neural network based learning to graphs. Existing graph neural networks use the synchronous distributed computing model and aggregate their neighbors in each…

Machine Learning · Computer Science 2022-05-25 Lukas Faber , Roger Wattenhofer

Graph Neural Networks (GNNs) have received considerable attention on graph-structured data learning for a wide variety of tasks. The well-designed propagation mechanism which has been demonstrated effective is the most fundamental part of…

Machine Learning · Computer Science 2021-01-29 Meiqi Zhu , Xiao Wang , Chuan Shi , Houye Ji , Peng Cui

Recent years have witnessed a rise in real-world data captured with rich structural information that can be conveniently depicted by multi-relational graphs. While inference of continuous node features across a simple graph is rather…

Machine Learning · Computer Science 2021-10-18 Eda Bayram

Graph Neural Networks (GNNs), neural network architectures targeted to learning representations of graphs, have become a popular learning model for prediction tasks on nodes, graphs and configurations of points, with wide success in…

Machine Learning · Computer Science 2022-04-19 Stefanie Jegelka

A variety of graph neural networks (GNNs) frameworks for representation learning on graphs have been recently developed. These frameworks rely on aggregation and iteration scheme to learn the representation of nodes. However, information…

Machine Learning · Computer Science 2020-03-25 Xinhan Di , Pengqian Yu , Rui Bu , Mingchao Sun

Message-passing based approaches form the default backbone of most learning architectures on graph-structured data. However, the rapid progress of modern deep learning architectures in other domains, particularly sequence modeling, raises…

Machine Learning · Computer Science 2026-05-13 Joël Mathys , Basil Rohner , Saku Peltonen , Roger Wattenhofer

We propose a learning algorithm for local routing policies that needs only a few data samples obtained from a single graph while generalizing to all random graphs in a standard model of wireless networks. We thus solve the all-pairs…

Machine Learning · Computer Science 2023-08-22 Yung-Fu Chen , Sen Lin , Anish Arora

Graph Convolutional Networks (GCNs) have gained significant developments in representation learning on graphs. However, current GCNs suffer from two common challenges: 1) GCNs are only effective with shallow structures; stacking multiple…

Machine Learning · Computer Science 2019-12-13 Menghan Wang , Kun Zhang , Gulin Li , Keping Yang , Luo Si