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Locally Decodable Codes (LDCs) are error-correcting codes $C:\Sigma^n\rightarrow \Sigma^m$ with super-fast decoding algorithms. They are important mathematical objects in many areas of theoretical computer science, yet the best…

Information Theory · Computer Science 2022-09-20 Alex Block , Jeremiah Blocki , Kuan Cheng , Elena Grigorescu , Xin Li , Yu Zheng , Minshen Zhu

Synthetic DNA can in principle be used for the archival storage of arbitrary data. Because errors are introduced during DNA synthesis, storage, and sequencing, an error-correcting code (ECC) is necessary for error-free recovery of the data.…

Quantitative Methods · Quantitative Biology 2018-12-05 William H. Press , John A. Hawkins

In this work, we study the performance of Reed--Solomon codes against adversarial insertion-deletion (insdel) errors. We prove that over fields of size $n^{O(k)}$ there are $[n,k]$ Reed-Solomon codes that can decode from $n-2k+1$ insdel…

Information Theory · Computer Science 2022-01-19 Roni Con , Amir Shpilka , Itzhak Tamo

We develop upper bounds on code size for an independent and identically distributed deletion and insertion channels for a given code length and target frame error probability. The bounds are obtained as a variation of a general converse…

Information Theory · Computer Science 2026-04-14 Ruslan Morozov , Tolga Mete Duman

In this paper, we give upper bounds on the sizes of $(d, L)$ list-decodable codes in the Hamming metric space from covering codes with the covering radius smaller than or equal to $d$. When the list size $L$ is $1$, this gives many new…

Information Theory · Computer Science 2023-01-25 Hao Chen , Longjiang Qu , Chengju Li , Shanxiang Lyu , Liqing Xu

The performance of Reed--Solomon codes (RS codes, for short) in the presence of insertion and deletion errors has attracted growing attention in recent literature. In this work, we further study this intriguing mathematical problem,…

Information Theory · Computer Science 2025-09-09 Peter Beelen , Roni Con , Anina Gruica , Maria Montanucci , Eitan Yaakobi

This paper studies the cardinality of codes correcting insertions and deletions. We give improved upper and lower bounds on code size. Our upper bound is obtained by utilizing the asymmetric property of list decoding for insertions and…

Information Theory · Computer Science 2023-12-14 Kenji Yasunaga

We construct constant-sized ensembles of linear error-correcting codes over any fixed alphabet that can correct a given fraction of adversarial erasures at rates approaching the Singleton bound arbitrarily closely. We provide several…

Information Theory · Computer Science 2025-04-07 Yeyuan Chen , Mahdi Cheraghchi , Nikhil Shagrithaya

The process of DNA-based data storage (DNA storage for short) can be mathematically modelled as a communication channel, termed DNA storage channel, whose inputs and outputs are sets of unordered sequences. To design error correcting codes…

Information Theory · Computer Science 2020-06-11 Wentu Song , Kui Cai , Kees A. Schouhamer Immink

We study two basic problems regarding edit error, i.e. document exchange and error correcting codes for edit errors (insdel codes). For message length $n$ and edit error upper bound $k$, it is known that in both problems the optimal sketch…

Data Structures and Algorithms · Computer Science 2018-07-18 Kuan Cheng , Zhengzhong Jin , Xin Li , Ke Wu

A single deletion error correcting code (SDECC) is a set of fixed-length sequences consisting of two types of symbols, 0 and 1, such that the original sequence can be recovered for at most one deletion error. The upper bound for the size of…

Information Theory · Computer Science 2023-09-27 Kazuhisa Nakasho , Manabu Hagiwara , Austin Anderson , J. B. Nation

An insdel refers to a deletion or an insertion, and an edit refers to an insdel or a substitution. In this paper, we consider the segmented single-insdel (resp. single-edit) channel, where the channel's input bit stream is partitioned into…

Information Theory · Computer Science 2024-05-08 Zhen Li , Xuan He , Xiaohu Tang

Recent efforts in coding theory have focused on building codes for insertions and deletions, called insdel codes, with optimal trade-offs between their redundancy and their error-correction capabilities, as well as efficient encoding and…

Information Theory · Computer Science 2020-12-08 Alexander R. Block , Jeremiah Blocki , Elena Grigorescu , Shubhang Kulkarni , Minshen Zhu

For codes equipped with metrics such as Hamming metric, symbol pair metric or cover metric, the Johnson bound guarantees list-decodability of such codes. That is, the Johnson bound provides a lower bound on the list-decoding radius of a…

Information Theory · Computer Science 2023-08-15 Shu Liu , Ivan Tjuawinata , Chaoping Xing

DNA storage systems face significant challenges, including insertion, deletion, and substitution (IDS) errors. Therefore, designing effective synchronization codes, i.e., codes capable of correcting IDS errors, is essential for DNA storage…

Information Theory · Computer Science 2025-05-23 Javad Haghighat , Tolga M. Duman

We introduce fast-decodable indexing schemes for edit distance which can be used to speed up edit distance computations to near-linear time if one of the strings is indexed by an indexing string $I$. In particular, for every length $n$ and…

Data Structures and Algorithms · Computer Science 2019-04-11 Bernhard Haeupler , Aviad Rubinstein , Amirbehshad Shahrasbi

Nanopore sequencers are emerging as promising new platforms for high-throughput sequencing. As with other technologies, sequencer errors pose a major challenge for their effective use. In this paper, we present a novel information theoretic…

Information Theory · Computer Science 2016-01-12 Jarek Duda , Wojciech Szpankowski , Ananth Grama

Recently, network error correction coding (NEC) has been studied extensively. Several bounds in classical coding theory have been extended to network error correction coding, especially the Singleton bound. In this paper, following the…

Information Theory · Computer Science 2010-11-08 Xuan Guang , Fang-Wei Fu , Zhen Zhang

A problem of index coding with side information was first considered by Y. Birk and T. Kol (IEEE INFOCOM, 1998). In the present work, a generalization of index coding scheme, where transmitted symbols are subject to errors, is studied.…

Information Theory · Computer Science 2011-01-17 Son Hoang Dau , Vitaly Skachek , Yeow Meng Chee

We improve the upper bound of Levenshtein for the cardinality of a code of length 4 capable of correcting single deletions over an alphabet of even size. We also illustrate that the new upper bound is sharp. Furthermore we will construct an…

Information Theory · Computer Science 2010-03-23 Hyun Kwang Kim , Joon Yop Lee , Dong Yeol Oh