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We develop numerical and analytical approaches to calculate mutual information between complete paths of two molecular components embedded into a larger reaction network. In particular, we focus on a continuous-time Markov chain formalism,…

Molecular Networks · Quantitative Biology 2022-08-09 Anne-Lena Moor , Christoph Zechner

In [Haruna, T. and Nakajima, K., 2011. Physica D 240, 1370-1377], the authors introduced the duality between values (words) and orderings (permutations) as a basis to discuss the relationship between information theoretic measures for…

Chaotic Dynamics · Physics 2015-06-04 Taichi Haruna , Kohei Nakajima

The aim of this paper is to investigate various information-theoretic measures, including entropy, mutual information, and some systematic measures that based on mutual information, for a class of structured spiking neuronal network. In…

Neurons and Cognition · Quantitative Biology 2019-12-04 Wenjie Li , Yao Li

Bayesian integral functional measure of entropy-uncertainty (EF) on trajectories of Markov multi-dimensional diffusion process is cutting off by interactive impulses (controls). Each cutoff minimax of EF superimposes and entangles…

Adaptation and Self-Organizing Systems · Physics 2014-10-03 Vladimir S. Lerner

The information entropy of a nuclear density distribution is calculated for a number of nuclei. Various phenomenological models for the density distribution using different geometry are employed. Nuclear densities calculated within various…

Nuclear Theory · Physics 2015-06-26 G. A. Lalazissis , S. E. Massen , C. P. Panos , S. S. Dimitrova

We study quantum correlations and complexity of simulation, characterized by quantum mutual information and entanglement entropy in operator space respectively, for thermal states in critical, non-critical and quantum chaotic spin chains. A…

Quantum Physics · Physics 2008-08-12 Marko Znidaric , Tomaz Prosen , Iztok Pizorn

In this work we consider information-theoretical observables to analyze short symbolic sequences, comprising time-series that represent the orientation of a single spin in a $2D$ Ising ferromagnet on a square lattice of size $L^2=128^2$,…

Statistical Mechanics · Physics 2015-03-05 O. Melchert , A. K. Hartmann

We propose a new perspective on Turbulence using Information Theory. We compute the entropy rate of a turbulent velocity signal and we particularly focus on its dependence on the scale. We first report how the entropy rate is able to…

Statistical Mechanics · Physics 2016-11-03 Carlos Granero-Belinchon , Stephane G. Roux , Nicolas B. Garnier

Stochastic chains represent a wide and key variety of phenomena in many branches of science within the context of Information Theory and Thermodynamics. They are typically approached by a sequence of independent events or by a memoryless…

Statistical Mechanics · Physics 2017-03-06 J. Ricardo Arias-Gonzalez

In a thermodynamic process with measurement and feedback, the second law of thermodynamics is no longer valid. In its place, various second-law-like inequalities have been advanced that each incorporate a distinct additional term accounting…

Statistical Mechanics · Physics 2015-06-22 Jordan M. Horowitz , Henrik Sandberg

The problem of calculating the rate of mutual information between two coarse-grained variables that together specify a continuous time Markov process is addressed. As a main obstacle, the coarse-grained variables are in general…

Statistical Mechanics · Physics 2013-10-01 Andre Cardoso Barato , David Hartich , Udo Seifert

Thermodynamics is based on the notions of energy and entropy. While energy is the elementary quantity governing physical dynamics, entropy is the fundamental concept in information theory. In this work, starting from first principles, we…

Statistical Mechanics · Physics 2017-10-25 Bernhard Altaner

Traditional thermodynamic trade-off relations usually apply to quantities that depend linearly on probability distributions. In contrast, many important information-theoretic measures, such as entropies, are nonlinear and therefore…

Statistical Mechanics · Physics 2026-02-17 Yoshihiko Hasegawa

Accurate characterization of entropy plays a pivotal role in capturing reversible and irreversible heating in supercapacitors during charging/discharging cycles. However, numerical methods that can faithfully capture entropy variation in…

Numerical Analysis · Mathematics 2024-09-17 Jie Ding , Xiang Ji , Shenggao Zhou

We introduce a growing one-dimensional quenched spin model that bases on asymmetrical one-side Ising interactions in the presence of external field. Numerical simulations and analytical calculations based on Markov chain theory show that…

Physics and Society · Physics 2014-05-13 Julian Sienkiewicz , Krzysztof Suchecki , Janusz A. Hołyst

We study a two-level system controlled in a discrete feedback loop, modeling both the system and the controller in terms of stochastic Markov processes. We find that the extracted work, which is known to be bounded from above by the mutual…

Statistical Mechanics · Physics 2015-09-02 Jaegon Um , Haye Hinrichsen , Chulan Kwon , Hyunggyu Park

The degree of non-Markovianity of quantum processes has been characterized in several different ways in the recent literature. However, the relationship between the non-Markovian behavior and the flow of information between the system and…

We present two new methods for estimating the order (memory depth) of a finite alphabet Markov chain from observation of a sample path. One method is based on entropy estimation via recurrence times of patterns, and the other relies on a…

Statistics Theory · Mathematics 2007-06-13 Yuval Peres , Paul Shields

Recent experiments have indicated that many biological systems self-organise near their critical point, which hints at a common design principle. While it has been suggested that information transmission is optimized near the critical…

Statistical Mechanics · Physics 2021-02-03 Matthijs Meijers , Sosuke Ito , Pieter Rein ten Wolde

Suppose there are $n$ Markov chains and we need to pay a per-step \emph{price} to advance them. The "destination" states of the Markov chains contain rewards; however, we can only get rewards for a subset of them that satisfy a…

Data Structures and Algorithms · Computer Science 2019-02-22 Anupam Gupta , Haotian Jiang , Ziv Scully , Sahil Singla