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Related papers: CP2K on the road to exascale

200 papers

Combustion kinetic modeling is an integral part of combustion simulation, and extensive studies have been devoted to developing both high fidelity and computationally affordable models. Despite these efforts, modeling combustion kinetics is…

Understanding the functional architecture of complex systems is crucial to illuminate their inner workings and enable effective methods for their prediction and control. Recent advances have introduced tools to characterise emergent…

Adaptation and Self-Organizing Systems · Physics 2024-06-06 Fernando E. Rosas , Bernhard C. Geiger , Andrea I Luppi , Anil K. Seth , Daniel Polani , Michael Gastpar , Pedro A. M. Mediano

We propose a quantum tomography (QT) approach to retrieve the temporally evolving reduced density matrix in elecotronic state basis, where the populations and coherence between ground state and excited state are reconstructed from the…

Chemical Physics · Physics 2024-03-11 Jiayang Jiang , Ming Zhang , Aosheng Gu , R. J. Dwayne Miller , Zheng Li

The kinetic Monte Carlo (kMC) method is used in many scientific fields in applications involving rare-event transitions. Due to its discrete stochastic nature, efforts to parallelize kMC approaches often produce unbalanced time evolutions…

Computational Physics · Physics 2017-01-04 Jerome P. Nilmeier , Jaime Marian

Bottom-up coarse-grained (CG) modeling expands the spatial and temporal scales of molecular simulation by seeking a reduced, thermodynamically consistent representation of an atomistic model. Developments in CG theory have largely focused…

Chemical Physics · Physics 2025-03-28 Patrick G. Sahrmann , Gregory A. Voth

We present a mathematical framework for constructing and analyzing parallel algorithms for lattice Kinetic Monte Carlo (KMC) simulations. The resulting algorithms have the capacity to simulate a wide range of spatio-temporal scales in…

Numerical Analysis · Mathematics 2015-05-28 Giorgos Arampatzis , Markos A. Katsoulakis , Petr Plechac , Michela Taufer , Lifan Xu

RESPACK is a first-principles calculation software for evaluating the interaction parameters of materials and is able to calculate maximally localized Wannier functions, response functions based on the random phase approximation and related…

Signed Particle Monte Carlo (SPMC) approach has been used in the past to model steady-state and transient dynamics of the Wigner quasi-distribution for electrons in low dimensional semiconductors. Here we make a step towards…

Quantum Physics · Physics 2023-03-29 Yu Wang , Lena Simine

The Lasserre Hierarchy is a set of semidefinite programs which yield increasingly tight bounds on optimal solutions to many NP-hard optimization problems. The hierarchy is parameterized by levels, with a higher level corresponding to a more…

Quantum Physics · Physics 2021-11-16 Ojas Parekh , Kevin Thompson

Policy optimization methods are popular reinforcement learning algorithms, because their incremental and on-policy nature makes them more stable than the value-based counterparts. However, the same properties also make them slow to converge…

Machine Learning · Computer Science 2021-07-01 Andrea Zanette , Ching-An Cheng , Alekh Agarwal

Quantum-based molecular dynamics (QMD) is a highly accurate and transferable method for material science simulations. However, the time scales and system sizes accessible to QMD are typically limited to picoseconds and a few hundred atoms.…

Quantum ESPRESSO is an open-source distribution of computer codes for quantum-mechanical materials modeling, based on density-functional theory, pseudopotentials, and plane waves, and renowned for its performance on a wide range of hardware…

We propose a new analytical approximation to the $\chi^2$ kernel that converges geometrically. The analytical approximation is derived with elementary methods and adapts to the input distribution for optimal convergence rate. Experiments…

Machine Learning · Computer Science 2015-03-20 Fuxin Li , Guy Lebanon , Cristian Sminchisescu

An alternative methodology to evaluate two-electron-repulsion integrals based on numerical approximation is proposed. Computational chemistry has branched into two major fields with methodologies based on quantum mechanics and classical…

Chemical Physics · Physics 2016-09-22 Pedro E. M. Lopes

Sequential Monte Carlo techniques are useful for state estimation in non-linear, non-Gaussian dynamic models. These methods allow us to approximate the joint posterior distribution using sequential importance sampling. In this framework,…

Computation · Statistics 2012-07-09 Mike Klaas , Nando de Freitas , Arnaud Doucet

Computer-Aided Design (CAD) plays a central role in engineering and manufacturing, making it possible to create precise and editable 3D models. Using a variety of sensor or user-provided data as inputs for CAD reconstruction can democratize…

Computer Vision and Pattern Recognition · Computer Science 2026-02-18 Maksim Kolodiazhnyi , Denis Tarasov , Dmitrii Zhemchuzhnikov , Alexander Nikulin , Ilya Zisman , Anna Vorontsova , Anton Konushin , Vladislav Kurenkov , Danila Rukhovich

Integrating quantum mechanics into drug discovery marks a decisive shift from empirical trial-and-error toward quantitative precision. However, the prohibitive cost of ab initio molecular dynamics has historically forced a compromise…

Quantum computation promises to provide substantial speedups in many practical applications with a particularly exciting one being the simulation of quantum many-body systems. Adiabatic state preparation (ASP) is one way that quantum…

Quantum Physics · Physics 2022-01-05 Vladimir Kremenetski , Carlos Mejuto-Zaera , Stephen J. Cotton , Norm M. Tubman

A hierarchical parallelization has been implemented in a new unified code PIMD-SMASH for ab initio simulation where the replicas and the Born-Oppenheimer forces are parallelized. It is demonstrated that ab initio path integral molecular…

Chemical Physics · Physics 2016-02-17 Sergi Ruiz-Barragan , Kazuya Ishimura , Motoyuki Shiga

It has been clearly identified that I/O is one of the bottleneck to extend application for the exascale era. New concepts such as 'in transit' and 'in situ' visualization and analysis have been identified as key technologies to circumvent…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-13 Loic Strafella , Damien Chapon
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