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eQuilibrator (equilibrator.weizmann.ac.il) is a calculator for biochemical equilibrium constants and Gibbs free energies, originally designed as a web-based interface. While the website now counts ${\sim}1000$ distinct monthly users, its…

Molecular Networks · Quantitative Biology 2021-03-02 Moritz E. Beber , Mattia G. Gollub , Dana Mozaffari , Kevin M. Shebek , Elad Noor

Fitting models to measured data is one of the standard tasks in the natural sciences, typically addressed early on in physics education in the context of laboratory courses, in which statistical methods play a central role in analysing and…

Physics Education · Physics 2022-10-25 Johannes Gäßler , Günter Quast , Daniel Savoiu , Cedric Verstege

Fractional calculus has become widely studied and applied to physical problems in recent years. As a result, many methods for the numerical computation of fractional derivatives and integrals have been defined. However, these algorithms are…

Mathematical Software · Computer Science 2019-12-12 Matthew Adams

This paper presents the design of the MuPIF distributed, multi-physics simulation platform and its performance in the context of the H2020 Composelector project. The description of MuPIF's model and data interfaces provides implementation…

Human-Computer Interaction · Computer Science 2022-01-13 B. Patzák , V. Šmilauer , M. Horák , S. Šulc , E. Dvořáková

Xsuite is a newly developed modular simulation package combining in a single flexible and modern framework the capabilities of different tools developed at CERN in the past decades, notably Sixtrack, Sixtracklib, COMBI and PyHEADTAIL. The…

I investigate the behavior of spin-dependent parton distribution functions in the regions of small and large momentum fractions $x$. I present a systematic comparison between predictions for relevant observables obtained with various models…

High Energy Physics - Phenomenology · Physics 2015-06-23 Emanuele Roberto Nocera

In the present study the software CrackComput, based on the Xfem and Xcrack libraries has been used for three problems- to experiment on the convergence properties of the method applied to elasto-statics crack problems, comparison of stress…

Computational Physics · Physics 2013-08-26 Dibakar Datta

Quantum circuits constructed from Josephson junctions and superconducting electronics are key to many quantum computing and quantum optics applications. Designing these circuits involves calculating the Hamiltonian describing their quantum…

Quantum Physics · Physics 2020-02-05 Mario F. Gely , Gary A. Steele

We describe Qiskit, a software development kit for quantum information science. We discuss the key design decisions that have shaped its development, and examine the software architecture and its core components. We demonstrate an…

Reliable knowledge of parton distributions at large x is crucial for many searches for new physics signals in the next generation of collider experiments. Although these are generally well determined in the small and medium x range, it has…

High Energy Physics - Phenomenology · Physics 2007-05-23 S. Kuhlmann , J. Huston , J. Morfin , F. Olness , J. Pumplin , J. F. Owens , W. K. Tung , J. J. Whitmore

New fragmentation functions (FFs) are extracted from a NLO QCD fit to the preliminary COMPASS data on pion and kaon multiplicities. It is shown that the new kaon FFs are very different from those of De Florian at al. (DSS) and Hirai et al.…

High Energy Physics - Phenomenology · Physics 2012-12-14 Elliot Leader , Alexander V. Sidorov , Dimiter B. Stamenov

QMetro++ is a Python package that provides a set of tools for identifying optimal estimation protocols that maximize quantum Fisher information (QFI). Optimization can be performed for arbitrary configurations of input states,…

Quantum Physics · Physics 2026-02-04 Piotr Dulian , Stanisław Kurdziałek , Rafał Demkowicz-Dobrzański

We present \code{phaser}, an open-source Python package that provides a unified interface to both conventional and gradient descent-based ptychographic algorithms. Features such as mixed-state probe, probe position correction, and…

Computational Physics · Physics 2025-07-21 Colin Gilgenbach , Menglin Zhu , James M. LeBeau

We report on some recent developments concerning parton-to-photon fragmentation functions. We briefly summarize the main theoretical concepts on which the currently available extractions of these fragmentation functions rely: evolution and…

High Energy Physics - Phenomenology · Physics 2017-08-23 Tom Kaufmann , Asmita Mukherjee , Werner Vogelsang

The consistent construction of quantum field theories beyond the simplest cases requires a precise characterization of the propagating degrees of freedom. These are encoded in the single-pole structure of two-point functions, a connection…

High Energy Physics - Theory · Physics 2026-03-25 Carlo Marzo

This article presents updates to lifex [Africa, SoftwareX (2022)], a C++ library for high-performance finite element simulations of multiphysics, multiscale and multidomain problems. In this release, we introduce an additional intergrid…

Numerical Analysis · Mathematics 2024-12-02 Michele Bucelli

$\mathtt{qnm}$ is an open-source Python package for computing the Kerr quasinormal mode frequencies, angular separation constants, and spherical-spheroidal mixing coefficients. The $\mathtt{qnm}$ package includes a Leaver solver with the…

General Relativity and Quantum Cosmology · Physics 2019-10-03 Leo C. Stein

Statistical modeling is a key element in many scientific fields and especially in High-Energy Physics (HEP) analysis. The standard framework to perform this task in HEP is the C++ ROOT/RooFit toolkit; with Python bindings that are only…

Data Analysis, Statistics and Probability · Physics 2020-05-21 Jonas Eschle , Albert Puig Navarro , Rafael Silva Coutinho , Nicola Serra

Transverse-momentum-dependent distributions (TMDs) are central in high-energy physics from both theoretical and phenomenological points of view. In this manual we introduce the library, TMDlib, of fits and parameterisations for…

High Energy Physics - Phenomenology · Physics 2015-06-22 F. Hautmann , H. Jung , M. Krämer , P. J. Mulders , E. R. Nocera , T. C. Rogers , A. Signori

A kinematic fitting package, KinFit, based on the Lagrange multiplier technique has been implemented for generic hadron physics experiments. It is particularly suitable for experiments where the interaction point is unknown, such as…

Data Analysis, Statistics and Probability · Physics 2024-01-23 Waleed Esmail , Jana Rieger , Jenny Taylor , Malin Bohman , Karin Schönning