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Deep learning (DL) has arguably emerged as the method of choice for the detection and segmentation of biological structures in microscopy images. However, DL typically needs copious amounts of annotated training data that is for biomedical…

Image and Video Processing · Electrical Eng. & Systems 2020-03-20 Mangal Prakash , Tim-Oliver Buchholz , Manan Lalit , Pavel Tomancak , Florian Jug , Alexander Krull

Liver segmentation on images acquired using computed tomography (CT) and magnetic resonance imaging (MRI) plays an important role in clinical management of liver diseases. Compared to MRI, CT images of liver are more abundant and readily…

Computer Vision and Pattern Recognition · Computer Science 2022-02-25 Jin Hong , Simon Chun-Ho Yu , Weitian Chen

Recent self-supervised advances in medical computer vision exploit global and local anatomical self-similarity for pretraining prior to downstream tasks such as segmentation. However, current methods assume i.i.d. image acquisition, which…

Computer Vision and Pattern Recognition · Computer Science 2023-12-13 Mengwei Ren , Neel Dey , Martin A. Styner , Kelly Botteron , Guido Gerig

Recent advancements in self-supervised learning have demonstrated that effective visual representations can be learned from unlabeled images. This has led to increased interest in applying self-supervised learning to the medical domain,…

Computer Vision and Pattern Recognition · Computer Science 2023-04-10 Xiangyi Yan , Junayed Naushad , Chenyu You , Hao Tang , Shanlin Sun , Kun Han , Haoyu Ma , James Duncan , Xiaohui Xie

Traditional supervised 3D medical image segmentation models need voxel-level annotations, which require huge human effort, time, and cost. Semi-supervised learning (SSL) addresses this limitation of supervised learning by facilitating…

Image and Video Processing · Electrical Eng. & Systems 2024-07-09 Suruchi Kumari , Aryan Das , Swalpa Kumar Roy , Indu Joshi , Pravendra Singh

New advancements in radio data post-processing are underway within the SKA precursor community, aiming to facilitate the extraction of scientific results from survey images through a semi-automated approach. Several of these developments…

We explore the value of weak labels in learning transferable representations for medical images. Compared to hand-labeled datasets, weak or inexact labels can be acquired in large quantities at significantly lower cost and can provide…

Computer Vision and Pattern Recognition · Computer Science 2021-08-05 Boon Peng Yap , Beng Koon Ng

Deep learning (DL) has emerged as a powerful tool for accelerated MRI reconstruction, but often necessitates a database of fully-sampled measurements for training. Recent self-supervised and unsupervised learning approaches enable training…

Image and Video Processing · Electrical Eng. & Systems 2023-11-30 Burhaneddin Yaman , Seyed Amir Hossein Hosseini , Mehmet Akçakaya

Weakly supervised learning has emerged as an appealing alternative to alleviate the need for large labeled datasets in semantic segmentation. Most current approaches exploit class activation maps (CAMs), which can be generated from…

Computer Vision and Pattern Recognition · Computer Science 2022-01-17 Gaurav Patel , Jose Dolz

In this work, we used a semi-supervised learning method to train deep learning model that can segment the brain MRI images. The semi-supervised model uses less labeled data, and the performance is competitive with the supervised model with…

Image and Video Processing · Electrical Eng. & Systems 2022-12-07 Hedong Zhang , Anand A. Joshi

Convolutional networks have marked their place over the last few years as the best performing model for various visual tasks. They are, however, most suited for supervised learning from large amounts of labeled data. Previous attempts have…

Machine Learning · Statistics 2016-11-23 Elad Hoffer , Itay Hubara , Nir Ailon

Medical image segmentation has been significantly advanced by deep learning (DL) techniques, though the data scarcity inherent in medical applications poses a great challenge to DL-based segmentation methods. Self-supervised learning offers…

Computer Vision and Pattern Recognition · Computer Science 2024-02-13 Binyan Hu , A. K. Qin

Pixel-level labels are particularly expensive to acquire. Hence, pretraining is a critical step to improve models on a task like semantic segmentation. However, prominent algorithms for pretraining neural networks use image-level…

Computer Vision and Pattern Recognition · Computer Science 2023-03-17 Mathilde Caron , Neil Houlsby , Cordelia Schmid

Machine learning has revolutionized the modeling of clinical timeseries data. Using machine learning, a Deep Neural Network (DNN) can be automatically trained to learn a complex mapping of its input features for a desired task. This is…

Machine Learning · Computer Science 2024-10-15 Ryan King , Shivesh Kodali , Conrad Krueger , Tianbao Yang , Bobak J. Mortazavi

Deep learning (DL) has shown promise for faster, high quality accelerated MRI reconstruction. However, supervised DL methods depend on extensive amounts of fully-sampled (labeled) data and are sensitive to out-of-distribution (OOD) shifts,…

Deep learning models benefit from training with a large dataset (labeled or unlabeled). Following this motivation, we present an approach to learn a deep learning model for the automatic segmentation of Organs at Risk (OARs) in cervical…

Image and Video Processing · Electrical Eng. & Systems 2023-02-22 Monika Grewal , Dustin van Weersel , Henrike Westerveld , Peter A. N. Bosman , Tanja Alderliesten

Accurate segmentation of retinal fluids in 3D Optical Coherence Tomography images is key for diagnosis and personalized treatment of eye diseases. While deep learning has been successful at this task, trained supervised models often fail…

Computer Vision and Pattern Recognition · Computer Science 2022-08-05 Alvaro Gomariz , Huanxiang Lu , Yun Yvonna Li , Thomas Albrecht , Andreas Maunz , Fethallah Benmansour , Alessandra M. Valcarcel , Jennifer Luu , Daniela Ferrara , Orcun Goksel

Pretraining CNN models (i.e., UNet) through self-supervision has become a powerful approach to facilitate medical image segmentation under low annotation regimes. Recent contrastive learning methods encourage similar global representations…

Computer Vision and Pattern Recognition · Computer Science 2023-10-20 Zhangsihao Yang , Mengwei Ren , Kaize Ding , Guido Gerig , Yalin Wang

Deep co-training has recently been proposed as an effective approach for image segmentation when annotated data is scarce. In this paper, we improve existing approaches for semi-supervised segmentation with a self-paced and self-consistent…

Computer Vision and Pattern Recognition · Computer Science 2021-07-15 Ping Wang , Jizong Peng , Marco Pedersoli , Yuanfeng Zhou , Caiming Zhang , Christian Desrosiers

Contrastive learning and self-supervised techniques have gained prevalence in computer vision for the past few years. It is essential for medical image analysis, which is often notorious for its lack of annotations. Most existing…

Image and Video Processing · Electrical Eng. & Systems 2022-03-07 Jun Li , Quan Quan , S. Kevin Zhou
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