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Genetic sequencing has become an increasingly affordable and accessible source of genomic data in computational biology. This data is often represented as $k$-mers, i.e., strings of some fixed length $k$ with symbols chosen from a reference…

Combinatorics · Mathematics 2020-07-06 Lucas Laird

In this paper, we analyze the coding delay and the average coding delay of random linear network codes (a.k.a. dense codes) and chunked codes (CC), which are an attractive alternative to dense codes due to their lower complexity, over line…

Information Theory · Computer Science 2012-07-26 Anoosheh Heidarzadeh , Amir H. Banihashemi

Generalized Tanner graphs have been implicitly studied by a number of authors under the rubric of generalized parity-check matrices. This work considers the conditioning of binary hidden variables in such models in order to break all cycles…

Information Theory · Computer Science 2007-07-13 Thomas R. Halford , Keith M. Chugg

Sampling-based decoding underlies complex reasoning in large language models (LLMs), where decoding strategies critically shape model behavior. Temperature- and truncation-based methods reshape the next-token distribution through global…

Artificial Intelligence · Computer Science 2026-02-02 Yixin Yang , Qingxiu Dong , Zhifang Sui

In this work we show how to decompose a linear code relatively to any given poset metric. We prove that the complexity of syndrome decoding is determined by a maximal (primary) such decomposition and then show that a refinement of a partial…

Information Theory · Computer Science 2015-02-19 Marcelo Firer , Jerry Anderson Pinheiro

A complexity-adaptive tree search algorithm is proposed for $\boldsymbol{G}_N$-coset codes that implements maximum-likelihood (ML) decoding by using a successive decoding schedule. The average complexity is close to that of the successive…

Information Theory · Computer Science 2021-09-03 Peihong Yuan , Mustafa Cemil Coşkun

The goal of this paper is to set a constraint programming framework to solve lot-sizing problems. More specifically, we consider a single-item lot-sizing problem with time-varying lower and upper bounds for production and inventory. The…

Optimization and Control · Mathematics 2019-07-05 Grigori German , Hadrien Cambazard , Jean-Philippe Gayon , Bernard Penz

The NP-hard problem of decoding random linear codes is crucial to both coding theory and cryptography. In particular, this problem underpins the security of many code based post-quantum cryptographic schemes. The state-of-art algorithms for…

Information Theory · Computer Science 2022-09-15 Haoxuan Wu , Jincheng Zhuang

We demonstrate a majority-logic decoding algorithm for decoding the generalised hyperoctahedral group $C_m \wr S_n$ when thought of as an error-correcting code. We also find the complexity of this decoding algorithm and compare it with that…

Combinatorics · Mathematics 2011-10-05 Robert F Bailey , Thomas Prellberg

Color coding is an algorithmic technique used in parameterized complexity theory to detect "small" structures inside graphs. The idea is to derandomize algorithms that first randomly color a graph and then search for an easily-detectable,…

Computational Complexity · Computer Science 2019-01-14 Max Bannach , Till Tantau

In CPM 2017, Amir et al. introduce a problem, named \emph{approximate string cover} (\textbf{ACP}), motivated by many aplications including coding and automata theory, formal language theory, combinatorics and molecular biology. A…

Data Structures and Algorithms · Computer Science 2018-06-22 Alexandru Popa , Andrei Tanasescu

This work investigates the structure of rank-metric codes in connection with concepts from finite geometry, most notably the $q$-analogues of projective systems and blocking sets. We also illustrate how to associate a classical…

Combinatorics · Mathematics 2021-06-24 Gianira N. Alfarano , Martino Borello , Alessandro Neri , Alberto Ravagnani

Error-correcting codes and related combinatorial constructs play an important role in several recent (and old) results in computational complexity theory. In this paper we survey results on locally-testable and locally-decodable…

Computational Complexity · Computer Science 2007-07-13 Luca Trevisan

In this paper, it is shown that the syndromes of generalized Reed-Solomon (GRS) codes and alternant codes can be characterized in terms of inverse fast Fourier transform, regardless of code definitions. Then a fast decoding algorithm is…

Information Theory · Computer Science 2025-02-05 Nianqi Tang , Yunghsiang S. Han , Danyang Pei , Chao Chen

Consider a distributed coding for computing problem with constant decoding locality, i.e., with a vanishing error probability, any single sample of the function can be approximately recovered by probing only constant number of compressed…

Information Theory · Computer Science 2024-03-01 Deheng Yuan , Tao Guo , Zhongyi Huang , Shi Jin

This paper presents encoding and decoding algorithms for several families of optimal rank metric codes whose codes are in restricted forms of symmetric, alternating and Hermitian matrices. First, we show the evaluation encoding is the right…

Information Theory · Computer Science 2022-02-08 Wrya K. Kadir , Chunlei Li , Ferdinando Zullo

In this work we address the issues of probabilistic modelling of the decoding errors in hybrid ARQ (HARQ) rounds. In particular we i) claim that the assumption of independence of decoding errors, used implicitly in various works on this…

Information Theory · Computer Science 2015-12-09 Redouane Sassioui , Etienne Pierre-Doray , Leszek Szczecinski , Benoit Pelletier

NP-complete problems should be hard on some instances but those may be extremely rare. On generic instances many such problems, especially related to random graphs, have been proven easy. We show the intractability of random instances of a…

Computational Complexity · Computer Science 2018-10-25 Leonid A. Levin , Ramarathnam Venkatesan

In the literature there exists analytical expressions for the probability of a receiver decoding a transmitted source message that has been encoded using random linear network coding. In this work, we look into the probability that the…

Information Theory · Computer Science 2022-03-08 Jessica Claridge , Ioannis Chatzigeorgiou

We present a novel technique for encoding and decoding constant weight binary codes that uses a geometric interpretation of the codebook. Our technique is based on embedding the codebook in a Euclidean space of dimension equal to the weight…

Combinatorics · Mathematics 2014-09-17 Chao Tian , Vinay A. Vaishampayan , N. J. A. Sloane