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Conjugation is a process in which bacteria exchange DNA through a physical connection (conjugative junction) between mating cells. Despite its significance for processes such as the spread of antibiotic resistance, the role of physical…

Populations and Evolution · Quantitative Biology 2017-12-07 Jakub Pastuszak , Bartlomiej Waclaw

Mechano-electric coupling (MEC) in atrial tissue has received sparse investigation to date, despite the well-known association between chronic atrial dilation and atrial fibrillation (AF). Of note, no fewer than six different mechanisms…

Quantitative Methods · Quantitative Biology 2020-09-30 Marta Varela , Adity Roy , Jack Lee

We investigate transport properties of molecular junctions under two types of bias--a short time pulse or an AC bias--by combining a solution for the Green functions in the time domain with electronic structure information coming from ab…

Mesoscale and Nanoscale Physics · Physics 2010-06-18 San-Huang Ke , Rui Liu , Weitao Yang , Harold U. Baranger

Convergence-extension in embryos is controlled by chemical and mechanical signalling. A key cellular process is the exchange of neighbours via T1 transitions. We propose and analyse a model with positive feedback between recruitment of…

Biological Physics · Physics 2022-04-05 Rastko Sknepnek , Ilyas Djafer-Cherif , Manli Chuai , Cornelis J. Weijer , Silke Henkes

Mobile wireless network research focuses on scenarios at the extremes of the network connectivity continuum where the probability of all nodes being connected is either close to unity, assuming connected paths between all nodes (mobile ad…

Networking and Internet Architecture · Computer Science 2016-11-15 Simon Heimlicher , Merkouris Karaliopoulos , Hanoch Levy , Thrasyvoulos Spyropoulos

We consider light propagation through a pair of nonlinear optical waveguides with absorption, placed in a medium with power gain. The active medium boosts the in-phase component of the overlapping evanescent fields of the guides, while the…

Optics · Physics 2015-06-17 N. V. Alexeeva , I. V. Barashenkov , K. Rayanov , S. Flach

With the goal of understanding the intricate behavior and dynamics of collections of neurons, we present superconducting circuits containing Josephson junctions that model biologically realistic neurons. These "Josephson junction neurons"…

Superconductivity · Physics 2013-05-29 Patrick Crotty , Daniel Schult , Ken Segall

Active transport of biomolecules assisted by motor proteins is imperative for the proper functioning of cellular activities. Inspired by the diffusion of active agents in crowded cellular channels, we computationally investigate the…

Soft Condensed Matter · Physics 2022-01-19 Rajiblochan Sahoo , Ligesh Theeyancheri , Rajarshi Chakrabarti

The dynamics of active matter driven by interacting molecular motors has a non-potential structure at the local scale. However, we show that there exists a quasi-potential effectively describing the collective self-organization of the…

Biological Physics · Physics 2022-06-15 Haythem Chelly , Pierre Recho

Axons functionally link the somato-dendritic compartment to synaptic terminals. Structurally and functionally diverse, they accomplish a central role in determining the delays and reliability with which neuronal ensembles communicate. By…

Neurons and Cognition · Quantitative Biology 2019-05-07 Pepe Alcami , Ahmed El Hady

The Thalamic Reticular Nuclei (TRN) mediate processes like attentional modulation, sensory gating and sleep spindles. The GABAergic inter neurons in the TRN are know to exhibit widespread synchronized activity patterns. One known…

Neurons and Cognition · Quantitative Biology 2023-11-13 Anca Radulescu , Michael Anderson

Vascular and non-vascular cells often form an interconnected network in vitro, similar to the early vascular bed of warm blooded embryos. Our time-lapse recordings show that the network forms by extending sprouts, i.e., multicellular linear…

Cell Behavior · Quantitative Biology 2009-11-13 Andras Szabo , Erica D. Perryn , Andras Czirok

In crowded systems, particle currents can be mediated by propagating collective excitations which are generated as rare events, are localized and have a finite lifetime. The theoretical description of such excitations is hampered by the…

Statistical Mechanics · Physics 2022-11-16 Alexander P. Antonov , David Voráč , Artem Ryabov , Philipp Maass

Recent evidence suggests that neural information is encoded in packets and may be flexibly routed from region to region. We have hypothesized that neural circuits are split into sub-circuits where one sub-circuit controls information…

Neurons and Cognition · Quantitative Biology 2017-03-17 Yuxiu Shao , Andrew T. Sornborger , Louis Tao

The conductance of a molecular junction is commonly determined by either charge-transfer-doping, where alignment of the Fermi energy to the molecular levels is achieved, or tunnelling through the tails of molecular resonances within the…

Mesoscale and Nanoscale Physics · Physics 2016-08-31 R. Gutierrez , G. Fagas , K. Richter , F. Grossmann , R. Schmidt

We study a network of spiking neurons with heterogeneous excitabilities connected via inhibitory delayed pulses. For globally coupled systems the increase of the inhibitory coupling reduces the number of firing neurons by following a Winner…

Disordered Systems and Neural Networks · Physics 2019-05-29 Stefano Luccioli , David Angulo Garcia , Alessandro Torcini

Molecular communication (MC) is a model of information transmission where the signal is transmitted by information-carrying molecules through their physical transport from a transmitter to a receiver through a communication channel. Prior…

Statistical Mechanics · Physics 2026-05-05 Phanindra Dewan , Sumantra Sarkar

Collectively moving cellular systems often contain a proportion of dead cells or non-motile genotypes. When mixed, nematically aligning motile and non-motile agents are known to segregate spontaneously. However, the role that topological…

A perturbative method is developed for calculating the effects of recurrent synaptic interactions between neurons embedded in a network. A series expansion is constructed that converges for networks with noisy membrane potential and weak…

Disordered Systems and Neural Networks · Physics 2009-11-10 Patrick D. Roberts

We study wave propagation in networks of coupled cells which can behave as excitable or self-oscillatory media. For excitable media, an asymptotic construction of wave trains is presented. This construction predicts their shape and speed,…

Other Condensed Matter · Physics 2009-11-11 A. Carpio