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Interpreting the inner function of neural networks is crucial for the trustworthy development and deployment of these black-box models. Prior interpretability methods focus on correlation-based measures to attribute model decisions to…

Machine Learning · Computer Science 2023-06-21 Ola Ahmad , Nicolas Bereux , Loïc Baret , Vahid Hashemi , Freddy Lecue

Discrete Bayesian Networks have been very successful as a framework both for inference and for expressing certain causal hypotheses. In this paper we present a class of graphical models called the chain event graph (CEG) models, that…

Methodology · Statistics 2007-09-24 Eva Riccomagno , Jim Q. Smith

Recurrent Neural Networks (RNNs) are popular models of brain function. The typical training strategy is to adjust their input-output behavior so that it matches that of the biological circuit of interest. Even though this strategy ensures…

Neurons and Cognition · Quantitative Biology 2020-11-09 Alessandro Salatiello , Martin A. Giese

Spiking Neural Networks (SNNs) provide a promising framework for energy-efficient and biologically grounded computation; however, scalable learning in deep recurrent architectures with sparse connectivity remains a major challenge. In this…

Neural and Evolutionary Computing · Computer Science 2026-05-04 Bo Tang , Weiwei Xie

Edge classification, a crucial task for graph applications, remains relatively under-explored compared to link prediction. Current methods often overlook the potential causal influences of node features on edge features, leading to a loss…

Machine Learning · Computer Science 2026-05-05 Duanyu Feng , Li Ding , Hongru Liang , Wenqiang Lei

Machine learning methods have shown promise in learning chaotic dynamical systems, enabling model-free short-term prediction and attractor reconstruction. However, when applied to large-scale, spatiotemporally chaotic systems, purely…

Chaotic Dynamics · Physics 2026-01-09 Kuei-Jan Chu , Nozomi Akashi , Akihiro Yamamoto

Emotion analysis is a crucial problem to endow artifact machines with real intelligence in many large potential applications. As external appearances of human emotions, electroencephalogram (EEG) signals and video face signals are widely…

Computer Vision and Pattern Recognition · Computer Science 2018-05-10 Tong Zhang , Wenming Zheng , Zhen Cui , Yuan Zong , Yang Li

Stochastic recurrent neural networks with latent random variables of complex dependency structures have shown to be more successful in modeling sequential data than deterministic deep models. However, the majority of existing methods have…

Machine Learning · Computer Science 2020-04-24 Ehsan Hajiramezanali , Arman Hasanzadeh , Nick Duffield , Krishna Narayanan , Mingyuan Zhou , Xiaoning Qian

We develop a method to decompose causal effects on a social network into an indirect effect mediated by the network, and a direct effect independent of the social network. To handle the complexity of network structures, we assume that…

Methodology · Statistics 2025-03-07 Alex Hayes , Mark M. Fredrickson , Keith Levin

Neural electromagnetic (EM) signals recorded non-invasively from individual human subjects vary in complexity and magnitude. Nonetheless, variation in neural activity has been difficult to quantify and interpret, due to complex, broad-band…

Neurons and Cognition · Quantitative Biology 2018-07-04 Trang-Anh Nghiem , Jean-Marc Lina , Matteo di Volo , Cristiano Capone , Alan C. Evans , Alain Destexhe , Jennifer S. Goldman

Prediction based on Irregularly Sampled Time Series (ISTS) is of wide concern in the real-world applications. For more accurate prediction, the methods had better grasp more data characteristics. Different from ordinary time series, ISTS is…

Machine Learning · Computer Science 2021-05-04 Chenxi Sun , Shenda Hong , Moxian Song , Yanxiu Zhou , Yongyue Sun , Derun Cai , Hongyan Li

We introduce a new approach to functional causal modeling from observational data, called Causal Generative Neural Networks (CGNN). CGNN leverages the power of neural networks to learn a generative model of the joint distribution of the…

Electroencephalograms (EEG) are noninvasive measurement signals of electrical neuronal activity in the brain. One of the current major statistical challenges is formally measuring functional dependency between those complex signals. This…

Methodology · Statistics 2021-05-14 Marco Antonio Pinto-Orellana , Peyman Mirtaheri , Hugo L. Hammer , Hernando Ombao

The ability to conduct interventions plays a pivotal role in learning causal relationships among variables, thus facilitating applications across diverse scientific disciplines such as genomics, economics, and machine learning. However, in…

Machine Learning · Statistics 2024-11-04 Abhinav Kumar , Kirankumar Shiragur , Caroline Uhler

Electrocorticography (ECoG) provides direct measurements of synchronized postsynaptic potentials at the exposed cortical surface. Patterns of signal covariance across ECoG sensors have been associated with diverse cognitive functions and…

Neurons and Cognition · Quantitative Biology 2017-06-20 Richard F. Betzel , John D. Medaglia , Ari E. Kahn , Jonathan Soffer , Daniel R. Schonhaut , Danielle S. Bassett

Brain-Computer Interface (BCI) is a system empowering humans to communicate with or control the outside world with exclusively brain intentions. Electroencephalography (EEG) based BCIs are promising solutions due to their convenient and…

Human-Computer Interaction · Computer Science 2021-06-11 Dalin Zhang , Lina Yao , Xiang Zhang , Sen Wang , Weitong Chen , Robert Boots

Correlations in spike-train ensembles can seriously impair the encoding of information by their spatio-temporal structure. An inevitable source of correlation in finite neural networks is common presynaptic input to pairs of neurons. Recent…

Neurons and Cognition · Quantitative Biology 2015-06-04 Tom Tetzlaff , Moritz Helias , Gaute T. Einevoll , Markus Diesmann

Despite success across diverse tasks, current artificial recurrent network architectures rely primarily on implicit hidden-state memories, limiting their interpretability and ability to model long-range dependencies. In contrast, biological…

Neural and Evolutionary Computing · Computer Science 2025-07-30 Daniel Szelogowski

Biological networks are pivotal in deciphering the complexity and functionality of biological systems. Causal inference, which focuses on determining the directionality and strength of interactions between variables rather than merely…

Molecular Networks · Quantitative Biology 2025-11-05 Hongyang Jiang , Yuezhu Wang , Ke Feng , Chaoyi Yin , Yi Chang , Huiyan Sun

What types of numeric representations emerge in neural systems, and what would a satisfying answer to this question look like? In this work, we interpret Neural Network (NN) solutions to sequence based number tasks using a variety of…

Machine Learning · Computer Science 2025-08-19 Satchel Grant , Noah D. Goodman , James L. McClelland