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PyPOTS is an open-source Python library dedicated to data mining and analysis on multivariate partially-observed time series with missing values. Particularly, it provides easy access to diverse algorithms categorized into five tasks:…

Machine Learning · Computer Science 2025-07-10 Wenjie Du , Yiyuan Yang , Linglong Qian , Jun Wang , Qingsong Wen

Artificial Intelligence (AI) and Machine Learning (ML) are pervasive in the current computer science landscape. Yet, there still exists a lack of software engineering experience and best practices in this field. One such best practice,…

Software Engineering · Computer Science 2021-03-09 Bart van Oort , Luís Cruz , Maurício Aniche , Arie van Deursen

Many business process models contain control flow errors, such as deadlocks or livelocks, which hinder proper execution. In this paper, we introduce a new tool that can instantaneously identify control flow errors in BPMN models, make them…

Software Engineering · Computer Science 2024-08-13 Tim Kräuter , Patrick Stünkel , Adrian Rutle , Yngve Lamo , Harald König

For building successful Machine Learning (ML) systems, it is imperative to have high quality data and well tuned learning models. But how can one assess the quality of a given dataset? And how can the strengths and weaknesses of a model on…

Machine Learning · Computer Science 2021-09-30 Pedro Yuri Arbs Paiva , Kate Smith-Miles , Maria Gabriela Valeriano , Ana Carolina Lorena

Computational notebooks became indispensable tools for research-related development, offering unprecedented interactivity and flexibility in the development process. However, these benefits come at the cost of reproducibility and an…

Software Engineering · Computer Science 2024-05-06 Konstantin Grotov , Sergey Titov , Yaroslav Zharov , Timofey Bryksin

Open-science collaboration using Jupyter Notebooks may expose expensively trained AI models, high-performance computing resources, and training data to security vulnerabilities, such as unauthorized access, accidental deletion, or misuse.…

Cryptography and Security · Computer Science 2024-10-01 Phuong Cao

PySINDy is a Python package for the discovery of governing dynamical systems models from data. In particular, PySINDy provides tools for applying the sparse identification of nonlinear dynamics (SINDy) (Brunton et al. 2016) approach to…

Python's dynamic type system, while offering significant flexibility and expressiveness, poses substantial challenges for static analysis and automated tooling, particularly in unannotated or partially annotated codebases. Existing type…

Software Engineering · Computer Science 2026-04-08 Ali Aman , Muhammad Asaduzzaman , Shaowei Wang

Active inference is an account of cognition and behavior in complex systems which brings together action, perception, and learning under the theoretical mantle of Bayesian inference. Active inference has seen growing applications in…

Artificial Intelligence · Computer Science 2022-05-06 Conor Heins , Beren Millidge , Daphne Demekas , Brennan Klein , Karl Friston , Iain Couzin , Alexander Tschantz

Method names play an important role in communicating the purpose and behavior of their functionality. Research has shown that high-quality names significantly improve code comprehension and the overall maintainability of software. However,…

Software Engineering · Computer Science 2025-04-30 Carol Wong , Gunnar Larsen , Rocky Huang , Bonita Sharif , Anthony Peruma

HYPERTILING is a high-performance Python library for the generation and visualization of regular hyperbolic lattices embedded in the Poincar\'e disk model. Using highly optimized, efficient algorithms, hyperbolic tilings with millions of…

Computational Physics · Physics 2024-06-27 Manuel Schrauth , Yanick Thurn , Florian Goth , Jefferson S. E. Portela , Dietmar Herdt , Felix Dusel

relentless is an open-source Python package that enables the optimization of objective functions computed using molecular dynamics simulations. It has a high-level, extensible interface for model parametrization; setting up, running, and…

Soft Condensed Matter · Physics 2024-08-07 Adithya N Sreenivasan , C. Levi Petix , Zachary M. Sherman , Michael P. Howard

In the rapidly evolving software development landscape, Python stands out for its simplicity, versatility, and extensive ecosystem. Python packages, as units of organization, reusability, and distribution, have become a pressing concern,…

Software Engineering · Computer Science 2025-09-05 Haowei Quan , Junjie Wang , Xinzhe Li , Terry Yue Zhuo , Xiao Chen , Xiaoning Du

This paper proposes a non-intrusive, declarative, dynamic and transparent system called `HiQ` to track Python program runtime information without compromising on the run-time system performance and losing insight. HiQ can be used for…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-04-27 Fuheng Wu , Ivan Davchev , Jun Qian

Recent advances in machine learning (ML) have accelerated progress in calibrating and operating quantum dot (QD) devices. However, most ML approaches rely on access to large, representative datasets designed to capture the full spectrum of…

Mesoscale and Nanoscale Physics · Physics 2026-03-05 Donovan L. Buterakos , Sandesh S. Kalantre , Joshua Ziegler , Jacob M. Taylor , Justyna P. Zwolak

Expert systems are effective tools for automatically identifying energy efficiency potentials in manufacturing, thereby contributing significantly to global climate targets. These systems analyze energy data, pinpoint inefficiencies, and…

Artificial Intelligence · Computer Science 2024-11-05 Borys Ioshchikhes , Michael Frank , Tresa Maria Joseph , Matthias Weigold

Methodology bugs in scientific Python code produce plausible but incorrect results that traditional linters and static analysis tools cannot detect. Several research groups have built ML-specific linters, demonstrating that detection is…

Software Engineering · Computer Science 2026-03-19 Sergey V. Samsonau

Computational notebooks are convenient for programmers, but can easily become confusing and inconsistent due to the ability to incrementally edit a program that is running. Recent reactive notebook systems, such as Ipyflow, Marimo and…

Human-Computer Interaction · Computer Science 2025-12-01 Megan Zheng , Will Crichton , Akshay Narayan , Deepti Raghavan , Nikos Vasilakis

This paper describes how to adapt a static code analyzer to help novice programmers. Current analyzers have been built to give feedback to experienced programmers who build new applications or systems. The type of feedback and the type of…

Software Engineering · Computer Science 2017-10-03 Tim Blok , Ansgar Fehnker

This paper presents a tool, PELIB, developed in MATLAB /SIMULINK environment to perform pointing performance analysis based on European pointing standards. PELIB is designed as an extension of the Satellite Dynamics Toolbox (SDT), which…

Systems and Control · Electrical Eng. & Systems 2021-06-04 Ilham Courie , Francesco Sanfedino , Daniel Alazard