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Spatial transcriptomics (ST) measures mRNA expression while preserving spatial organization, but multi-slice analysis faces two coupled difficulties: large non-rigid deformations across slices and inter-slice batch effects when alignment…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Bonian Han , Cong Qi , Przemyslaw Musialski , Zhi Wei

Implicit Neural Representation (INR) is an innovative approach for representing complex shapes or objects without explicitly defining their geometry or surface structure. Instead, INR represents objects as continuous functions. Previous…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Hanqiu Chen , Hang Yang , Stephen Fitzmeyer , Cong Hao

Implicit neural representations (INRs) have emerged as a compact and parametric alternative to discrete array-based data representations, encoding information directly in neural network weights to enable resolution-independent…

Machine Learning · Computer Science 2025-09-22 Yuan Ni , Zhantao Chen , Cheng Peng , Rajan Plumley , Chun Hong Yoon , Jana B. Thayer , Joshua J. Turner

Integrating high-level semantically correlated contents and low-level anatomical features is of central importance in medical image segmentation. Towards this end, recent deep learning-based medical segmentation methods have shown great…

Computer Vision and Pattern Recognition · Computer Science 2023-07-19 Chenyu You , Weicheng Dai , Yifei Min , Lawrence Staib , James S. Duncan

Motion artifacts in Magnetic Resonance Imaging (MRI) arise due to relatively long acquisition times and can compromise the clinical utility of acquired images. Traditional motion correction methods often fail to address severe motion,…

Image and Video Processing · Electrical Eng. & Systems 2024-07-04 Ziad Al-Haj Hemidi , Christian Weihsbach , Mattias P. Heinrich

The recent success of implicit neural scene representations has presented a viable new method for how we capture and store 3D scenes. Unlike conventional 3D representations, such as point clouds, which explicitly store scene properties in…

Computer Vision and Pattern Recognition · Computer Science 2021-01-19 Amit Kohli , Vincent Sitzmann , Gordon Wetzstein

Recovering high-fidelity 3D images from sparse or degraded 2D images is a fundamental challenge in medical imaging, with broad applications ranging from 3D ultrasound reconstruction to MRI super-resolution. In the context of fetal MRI,…

Computer Vision and Pattern Recognition · Computer Science 2025-12-17 Maik Dannecker , Steven Jia , Nil Stolt-Ansó , Nadine Girard , Guillaume Auzias , François Rousseau , Daniel Rueckert

Implicit neural representations (INRs) have emerged as a powerful tool for compressing large-scale volume data. This opens up new possibilities for in situ visualization. However, the efficient application of INRs to distributed data…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-23 Qi Wu , Joseph A. Insley , Victor A. Mateevitsi , Silvio Rizzi , Michael E. Papka , Kwan-Liu Ma

Self-supervised learning methods like masked autoencoders (MAE) have shown significant promise in learning robust feature representations, particularly in image reconstruction-based pretraining task. However, their performance is often…

Computer Vision and Pattern Recognition · Computer Science 2025-07-31 Sua Lee , Joonhun Lee , Myungjoo Kang

Implicit Neural Representations (INRs) are powerful to parameterize continuous signals in computer vision. However, almost all INRs methods are limited to low-level tasks, e.g., image/video compression, super-resolution, and image…

Computer Vision and Pattern Recognition · Computer Science 2023-12-04 Yiran Song , Qianyu Zhou , Lizhuang Ma

High-resolution (HR) videos play a crucial role in many computer vision applications. Although existing video restoration (VR) methods can significantly enhance video quality by exploiting temporal information across video frames, they are…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Mary Aiyetigbo , Wanqi Yuan , Feng Luo , Nianyi Li

Super-resolving the Magnetic Resonance (MR) image of a target contrast under the guidance of the corresponding auxiliary contrast, which provides additional anatomical information, is a new and effective solution for fast MR imaging.…

Image and Video Processing · Electrical Eng. & Systems 2022-08-23 Chun-Mei Feng , Yunlu Yan , Kai Yu , Yong Xu , Ling Shao , Huazhu Fu

High-resolution fMRI provides a window into the brain's mesoscale organization. Yet, higher spatial resolution increases scan times, to compensate for the low signal and contrast-to-noise ratio. This work introduces a deep learning-based 3D…

Image and Video Processing · Electrical Eng. & Systems 2024-03-20 Hongwei Bran Li , Matthew S. Rosen , Shahin Nasr , Juan Eugenio Iglesias

Arbitrary-resolution super-resolution (ARSR) provides crucial flexibility for medical image analysis by adapting to diverse spatial resolutions. However, traditional CNN-based methods are inherently ill-suited for ARSR, as they are…

Image and Video Processing · Electrical Eng. & Systems 2025-08-06 Bo Zhang , JianFei Huo , Zheng Zhang , Wufan Wang , Hui Gao , Xiangyang Gong , Wendong Wang

Magnetic resonance imaging (MRI) is a valuable clinical tool for displaying anatomical structures and aiding in accurate diagnosis. Medical image super-resolution (SR) reconstruction using deep learning techniques can enhance lesion…

Computer Vision and Pattern Recognition · Computer Science 2023-05-30 Xin Hua , Zhijiang Du , Hongjian Yu , Jixin Maa

Synthetic aperture sonar (SAS) image resolution is constrained by waveform bandwidth and array geometry. Specifically, the waveform bandwidth determines a point spread function (PSF) that blurs the locations of point scatterers in the…

Computer Vision and Pattern Recognition · Computer Science 2021-12-17 Albert Reed , Thomas Blanford , Daniel C. Brown , Suren Jayasuriya

Modern medical image segmentation methods primarily use discrete representations in the form of rasterized masks to learn features and generate predictions. Although effective, this paradigm is spatially inflexible, scales poorly to…

Computer Vision and Pattern Recognition · Computer Science 2024-03-22 Yejia Zhang , Pengfei Gu , Nishchal Sapkota , Danny Z. Chen

Quantitative magnetic resonance imaging (qMRI) provides tissue-specific parameters vital for clinical diagnosis. Although simultaneous multi-parametric qMRI (MP-qMRI) technologies enhance imaging efficiency, robustly reconstructing qMRI…

Image and Video Processing · Electrical Eng. & Systems 2025-06-12 Haonan Zhang , Guoyan Lao , Yuyao Zhang , Hongjiang Wei

In an era where the exponential growth of image data driven by the Internet of Things (IoT) is outpacing traditional storage solutions, this work explores and advances the potential of Implicit Neural Representation (INR) as a…

Image and Video Processing · Electrical Eng. & Systems 2024-09-23 Sai Sanjeet , Seyyedali Hosseinalipour , Jinjun Xiong , Masahiro Fujita , Bibhu Datta Sahoo

Diffusion-weighted magnetic resonance imaging (DW-MRI) can be used to characterise the microstructure of the nervous tissue, e.g. to delineate brain white matter connections in a non-invasive manner via fibre tracking. Magnetic Resonance…