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Over the past few years, there has been a considerable spread of microarray technology in many biological patterns, particularly in those pertaining to cancer diseases like leukemia, prostate, colon cancer, etc. The primary bottleneck that…

Quantitative Methods · Quantitative Biology 2020-07-20 Parth Patel , Kalpdrum Passi , Chakresh Kumar Jain

We introduce and demonstrate the variational autoencoder (VAE) for probabilistic non-negative matrix factorisation (PAE-NMF). We design a network which can perform non-negative matrix factorisation (NMF) and add in aspects of a VAE to make…

Machine Learning · Computer Science 2019-06-17 Steven Squires , Adam Prügel Bennett , Mahesan Niranjan

Non-negative matrix factorization (NMF) is a dimensionality reduction technique that has shown promise for analyzing noisy data, especially astronomical data. For these datasets, the observed data may contain negative values due to noise…

Instrumentation and Methods for Astrophysics · Physics 2024-10-04 Dylan Green , Stephen Bailey

This paper proposes a determined blind source separation method using Bayesian non-parametric modelling of sources. Conventionally source signals are separated from a given set of mixture signals by modelling them using non-negative matrix…

Sound · Computer Science 2019-04-09 Chaitanya Narisetty , Tatsuya Komatsu , Reishi Kondo

We consider a variant of matrix completion where entries are revealed in a biased manner. We wish to understand the extent to which such bias can be exploited in improving predictions. Towards that, we propose a natural model where the…

Machine Learning · Computer Science 2025-01-03 Yassir Jedra , Sean Mann , Charlotte Park , Devavrat Shah

Classical computing has borne witness to the development of machine learning. The integration of quantum technology into this mix will lead to unimaginable benefits and be regarded as a giant leap forward in mankind's ability to compute.…

Quantum Physics · Physics 2023-11-03 Hinako Asaoka , Kazue Kudo

Referring back to the original text in the course of hierarchical learning is a common human trait that ensures the right direction of learning. The models developed based on the concept of Non-negative Matrix Factorization (NMF), in this…

Machine Learning · Computer Science 2024-05-24 Prasun Dutta , Rajat K. De

Non-Negative Matrix Factorization (NMF) is an unsupervised learning method offering low-rank representations across various domains such as audio processing, biomedical signal analysis, and image recognition. The incorporation of…

Machine Learning · Computer Science 2025-10-09 Yasaman Torabi , Shahram Shirani , James P. Reilly

This article introduces a nonlinear generalized matrix factor model (GMFM) that allows for mixed-type variables, extending the scope of linear matrix factor models (LMFM) that are so far limited to handling continuous variables. We…

Methodology · Statistics 2024-09-17 Xinbing Kong , Tong Zhang

Nonnegative matrix factorization (NMF), a dimensionality reduction and factor analysis method, is a special case in which factor matrices have low-rank nonnegative constraints. Considering the stochastic learning in NMF, we specifically…

Numerical Analysis · Computer Science 2018-04-05 Hiroyuki Kasai

A common approach to analyze a covariate-sample count matrix, an element of which represents how many times a covariate appears in a sample, is to factorize it under the Poisson likelihood. We show its limitation in capturing the tendency…

Methodology · Statistics 2017-10-06 Mingyuan Zhou

Non-negative Matrix Factorisation (NMF) has been extensively used in machine learning and data analytics applications. Most existing variations of NMF only consider how each row/column vector of factorised matrices should be shaped, and…

Machine Learning · Computer Science 2019-07-09 Shuai Jiang , Kan Li , Richard Yida Xu

This work proposes a new algorithm for automated and simultaneous phenotyping of multiple co-occurring medical conditions, also referred as comorbidities, using clinical notes from the electronic health records (EHRs). A basic latent factor…

Machine Learning · Statistics 2016-09-21 Shalmali Joshi , Suriya Gunasekar , David Sontag , Joydeep Ghosh

Nonnegative matrix factorization (NMF) has found many applications including topic modeling and document analysis. Hierarchical NMF (HNMF) variants are able to learn topics at various levels of granularity and illustrate their hierarchical…

Machine Learning · Computer Science 2022-02-16 Joshua Vendrow , Jamie Haddock , Deanna Needell

A gamma process dynamic Poisson factor analysis model is proposed to factorize a dynamic count matrix, whose columns are sequentially observed count vectors. The model builds a novel Markov chain that sends the latent gamma random variables…

Machine Learning · Statistics 2015-12-31 Ayan Acharya , Joydeep Ghosh , Mingyuan Zhou

This paper addresses the estimation of the latent dimensionality in nonnegative matrix factorization (NMF) with the \beta-divergence. The \beta-divergence is a family of cost functions that includes the squared Euclidean distance,…

Machine Learning · Statistics 2012-10-08 Vincent Y. F. Tan , Cédric Févotte

A novel approach to Boolean matrix factorization (BMF) is presented. Instead of solving the BMF problem directly, this approach solves a nonnegative optimization problem with the constraint over an auxiliary matrix whose Boolean structure…

Data Structures and Algorithms · Computer Science 2021-08-27 Duc P. Truong , Erik Skau , Derek Desantis , Boian Alexandrov

Matrix factorization from a small number of observed entries has recently garnered much attention as the key ingredient of successful recommendation systems. One unresolved problem in this area is how to adapt current methods to handle…

Machine Learning · Computer Science 2012-08-07 John Z. Sun , Kush R. Varshney , Karthik Subbian

The nonnegative matrix factorization (NMF) is widely used in signal and image processing, including bio-informatics, blind source separation and hyperspectral image analysis in remote sensing. A great challenge arises when dealing with a…

Computer Vision and Pattern Recognition · Computer Science 2016-03-29 Fei Zhu , Paul Honeine , Maya Kallas

Non-negative matrix factorization (NMF) is the problem of determining two non-negative low rank factors $W$ and $H$, for the given input matrix $A$, such that $A \approx W H$. NMF is a useful tool for many applications in different domains…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-01 Ramakrishnan Kannan , Grey Ballard , Haesun Park