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We introduce a novel masked pre-training technique for graph neural networks (GNNs) applied to computational fluid dynamics (CFD) problems. By randomly masking up to 40\% of input mesh nodes during pre-training, we force the model to learn…

Machine Learning · Computer Science 2025-08-27 Paul Garnier , Vincent Lannelongue , Jonathan Viquerat , Elie Hachem

The implicit solvent approach offers a computationally efficient framework to model solvation effects in molecular simulations. However, its accuracy often falls short compared to explicit solvent models, limiting its use in precise…

In recent studies, neural message passing has proved to be an effective way to design graph neural networks (GNNs), which have achieved state-of-the-art performance in many graph-based tasks. However, current neural-message passing…

Machine Learning · Computer Science 2021-04-21 Wentao Zhang , Yu Shen , Zheyu Lin , Yang Li , Xiaosen Li , Wen Ouyang , Yangyu Tao , Zhi Yang , Bin Cui

Artificial neural networks (NNs) are one of the most frequently used machine learning approaches to construct interatomic potentials and enable efficient large-scale atomistic simulations with almost ab initio accuracy. However, the…

Computational Physics · Physics 2021-10-05 Viktor Zaverkin , David Holzmüller , Ingo Steinwart , Johannes Kästner

The increasing complexity and scale of Deep Neural Networks (DNNs) necessitate specialized tensor accelerators, such as Tensor Processing Units (TPUs), to meet various computational and energy efficiency requirements. Nevertheless,…

Hardware Architecture · Computer Science 2025-03-11 Deepak Vungarala , Mohammed E. Elbtity , Sumiya Syed , Sakila Alam , Kartik Pandit , Arnob Ghosh , Ramtin Zand , Shaahin Angizi

The rapid development of pretrained Machine Learning Interatomic Potentials (MLIPs) that cover a wide range of molecular species has made it challenging to select the best model for a given application. We benchmark 15 pretrained MLIPs,…

Chemical Physics · Physics 2026-04-22 Peter Eastman , Evan Pretti , Thomas E. Markland

Universal machine-learning interatomic potentials (uMLIPs) enable reactive molecular simulations with near-DFT accuracy, yet applying them efficiently to large, realistic condensed-phase systems remains computationally demanding. Here we…

Materials Science · Physics 2026-03-25 Yu Miyazaki , Atsuhiro Tomita , Akihide Hayashi , So Takamoto , Mizuki Takemoto , Hodaka Mori

With recent advancements in machine learning for interatomic potentials, Python has become the go-to programming language for exploring new ideas. While machine-learning potentials are often developed in Python-based frameworks, existing…

Algorithm learning is a core problem in artificial intelligence with significant implications on automation level that can be achieved by machines. Recently deep learning methods are emerging for synthesizing an algorithm from its…

Neural and Evolutionary Computing · Computer Science 2018-09-20 Karlis Freivalds , Renars Liepins

State-of-the-art AI deep potentials provide ab initio-quality results, but at a fraction of the computational cost of first-principles quantum mechanical calculations, such as density functional theory. In this work, we bring AI deep…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-03 Andong Hu , Luca Pennati , Stefano Markidis , Ivy Peng

Learning-based methods have made significant progress in physics simulation, typically approximating dynamics with a monolithic end-to-end optimized neural network. Although these models offer an effective way to simulation, they may lose…

Machine Learning · Computer Science 2025-12-18 Yifei Li , Haixu Wu , Zeyi Xu , Tuur Stuyck , Wojciech Matusik

The high arithmetic performance and intrinsic parallelism of recent graphical processing units (GPUs) can offer a technological edge for molecular dynamics simulations. ACEMD is a production-class bio-molecular dynamics (MD) simulation…

Computational Physics · Physics 2009-02-06 M. J. Harvey , G. Giupponi , G. De Fabritiis

We present an accurate machine learning (ML) model for atomistic simulations of carbon, constructed using the Gaussian approximation potential (GAP) methodology. The potential, named GAP-20, describes the properties of the bulk crystalline…

Computational Physics · Physics 2020-08-26 Patrick Rowe , Volker L Deringer , Piero Gasparotto , Gábor Csányi , Angelos Michaelides

Path integral molecular dynamics (PIMD), which maps a quantum particle onto a fictitious classical system of ring polymers and propagates the "beads" of this extended classical system using molecular dynamics, is widely used to capture…

The rise of machine learning workload on smartphones has propelled GPUs into one of the most power-hungry components of modern smartphones and elevates the need for optimizing the GPU power draw by mobile apps. Optimizing the power…

Performance · Computer Science 2024-08-12 Pranab Dash , Y. Charlie Hu , Abhilash Jindal

Graph neural network(GNN) has been widely applied in real-world applications, such as product recommendation in e-commerce platforms and risk control in financial management systems. Several cache-based GNN systems have been built to…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-13 Jie Sun , Li Su , Zuocheng Shi , Wenting Shen , Zeke Wang , Lei Wang , Jie Zhang , Yong Li , Wenyuan Yu , Jingren Zhou , Fei Wu

Communication is a key bottleneck for distributed graph neural network (GNN) training. This paper proposes GNNPipe, a new approach that scales the distributed full-graph deep GNN training. Being the first to use layer-level model…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-26 Jingji Chen , Zhuoming Chen , Xuehai Qian

We propose MindVL, a multimodal large language model (MLLMs) trained on Ascend NPUs. The training of state-of-the-art MLLMs is often confined to a limited set of hardware platforms and relies heavily on massive, undisclosed data recipes,…

Computer Vision and Pattern Recognition · Computer Science 2025-10-01 Feilong Chen , Yijiang Liu , Yi Huang , Hao Wang , Miren Tian , Ya-Qi Yu , Minghui Liao , Jihao Wu

Neural networks (NNs) are growing in importance and complexity. A neural network's performance (and energy efficiency) can be bound either by computation or memory resources. The processing-in-memory (PIM) paradigm, where computation is…

Hardware Architecture · Computer Science 2023-03-28 Geraldo F. Oliveira , Juan Gómez-Luna , Saugata Ghose , Amirali Boroumand , Onur Mutlu

Graph Neural Networks (GNNs) have shown great success in many applications such as recommendation systems, molecular property prediction, traffic prediction, etc. Recently, CPU-FPGA heterogeneous platforms have been used to accelerate many…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-23 Yi-Chien Lin , Bingyi Zhang , Viktor Prasanna