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Building trees to represent or to fit distances is a critical component of phylogenetic analysis, metric embeddings, approximation algorithms, geometric graph neural nets, and the analysis of hierarchical data. Much of the previous…

Data Structures and Algorithms · Computer Science 2024-09-04 Joon-Hyeok Yim , Anna C. Gilbert

Fitting distances to tree metrics and ultrametrics are two widely used methods in hierarchical clustering, primarily explored within the context of numerical taxonomy. Given a positive distance function…

Data Structures and Algorithms · Computer Science 2025-04-25 Amir Carmel , Debarati Das , Evangelos Kipouridis , Evangelos Pipis

The development of data-dependent heuristics and representations for biological sequences that reflect their evolutionary distance is critical for large-scale biological research. However, popular machine learning approaches, based on…

Quantitative Methods · Quantitative Biology 2021-10-13 Gabriele Corso , Rex Ying , Michal Pándy , Petar Veličković , Jure Leskovec , Pietro Liò

Deep neural networks are learning models with a very high capacity and therefore prone to over-fitting. Many regularization techniques such as Dropout, DropConnect, and weight decay all attempt to solve the problem of over-fitting by…

Machine Learning · Computer Science 2016-12-06 Armen Aghajanyan

Data denoising is a persistent challenge across scientific and engineering domains. Real-world data is frequently corrupted by complex, non-linear noise, rendering traditional rule-based denoising methods inadequate. To overcome these…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Chang Nie , Tianchen Deng , Zhe Liu , Hesheng Wang

Metric learning is a key problem for many data mining and machine learning applications, and has long been dominated by Mahalanobis methods. Recent advances in nonlinear metric learning have demonstrated the potential power of…

Machine Learning · Statistics 2014-02-25 David M. Johnson , Caiming Xiong , Jason J. Corso

In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…

Data Structures and Algorithms · Computer Science 2010-06-18 Marek Cygan , Lukasz Kowalik , Marcin Mucha , Marcin Pilipczuk , Piotr Sankowski

We study the problem of black-box optimization of a noisy function in the presence of low-cost approximations or fidelities, which is motivated by problems like hyper-parameter tuning. In hyper-parameter tuning evaluating the black-box…

Machine Learning · Statistics 2018-10-25 Rajat Sen , Kirthevasan Kandasamy , Sanjay Shakkottai

Implicit feedback, such as user clicks, serves as the primary data source for modern recommender systems. However, click interactions inherently contain substantial noise, including accidental clicks, clickbait-induced interactions, and…

Information Retrieval · Computer Science 2026-02-18 Xikai Yang , Yang Wang , Yilin Li , Sebastian Sun

Most real-world classification problems deal with imbalanced datasets, posing a challenge for Artificial Intelligence (AI), i.e., machine learning algorithms, because the minority class, which is of extreme interest, often proves difficult…

Machine Learning · Computer Science 2025-04-28 Gissel Velarde , Michael Weichert , Anuj Deshmunkh , Sanjay Deshmane , Anindya Sudhir , Khushboo Sharma , Vaibhav Joshi

Seismic data denoising is an important part of seismic data processing, which directly relate to the follow-up processing of seismic data. In terms of this issue, many authors proposed many methods based on rank reduction, sparse…

Geophysics · Physics 2024-08-27 Xueting Yang , Yong Li , Zhangquan Liao , Yingtian Liu , Junheng Peng

Reduction of unwanted environmental noises is an important feature of today's hearing aids (HA), which is why noise reduction is nowadays included in almost every commercially available device. The majority of these algorithms, however, is…

Audio and Speech Processing · Electrical Eng. & Systems 2019-11-26 Marc Aubreville , Kai Ehrensperger , Tobias Rosenkranz , Benjamin Graf , Henning Puder , Andreas Maier

Tree-boosting is a widely used machine learning technique for tabular data. However, its out-of-sample accuracy is critically dependent on multiple hyperparameters. In this article, we empirically compare several popular methods for…

Machine Learning · Computer Science 2026-05-29 Floris Jan Koster , Fabio Sigrist

Given data, finding a faithful low-dimensional hyperbolic embedding of the data is a key method by which we can extract hierarchical information or learn representative geometric features of the data. In this paper, we explore a new method…

Machine Learning · Computer Science 2020-10-26 Rishi Sonthalia , Anna C. Gilbert

Motivation: Navigating the high dimensional space of discrete trees for phylogenetics presents a challenging problem for tree optimisation. To address this, hyperbolic embeddings of trees offer a promising approach to encoding trees…

Populations and Evolution · Quantitative Biology 2023-09-22 Matthew Macaulay , Mathieu Fourment

We study the problem of fitting an ultrametric distance to a dissimilarity graph in the context of hierarchical cluster analysis. Standard hierarchical clustering methods are specified procedurally, rather than in terms of the cost function…

Machine Learning · Computer Science 2021-02-03 Giovanni Chierchia , Benjamin Perret

Image denoising is a fundamental problem in computational photography, where achieving high perception with low distortion is highly demanding. Current methods either struggle with perceptual quality or suffer from significant distortion.…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Tong Li , Hansen Feng , Lizhi Wang , Zhiwei Xiong , Hua Huang

Learning in hyperbolic spaces has attracted increasing attention due to its superior ability to model hierarchical structures of data. Most existing hyperbolic learning methods use fixed distance measures for all data, assuming a uniform…

Computer Vision and Pattern Recognition · Computer Science 2025-06-24 Pengxiang Li , Yuwei Wu , Zhi Gao , Xiaomeng Fan , Wei Wu , Zhipeng Lu , Yunde Jia , Mehrtash Harandi

Optical neuroimaging is a vital tool for understanding the brain structure and the connection between regions and nuclei. However, the image noise introduced in the sample preparation and the imaging system hinders the extraction of the…

Image and Video Processing · Electrical Eng. & Systems 2021-09-23 Tianfang Zhu , Yue Guan , Anan Li

Denoising is the essential step for distant supervision based named entity recognition. Previous denoising methods are mostly based on instance-level confidence statistics, which ignore the variety of the underlying noise distribution on…

Computation and Language · Computer Science 2021-06-18 Wenkai Zhang , Hongyu Lin , Xianpei Han , Le Sun , Huidan Liu , Zhicheng Wei , Nicholas Jing Yuan
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