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This paper considers the problem of undersampled MRI reconstruction. We propose a novel Transformer-based framework for directly processing signal in k-space, going beyond the limitation of regular grids as ConvNets do. We adopt an implicit…

Image and Video Processing · Electrical Eng. & Systems 2022-11-11 Ziheng Zhao , Tianjiao Zhang , Weidi Xie , Yanfeng Wang , Ya Zhang

Segmenting deep brain structures from magnetic resonance images is important for patient diagnosis, surgical planning, and research. Most current state-of-the-art solutions follow a segmentation-by-registration approach, where subject MRIs…

Image and Video Processing · Electrical Eng. & Systems 2022-05-20 Mehri Baniasadi , Mikkel V. Petersen , Jorge Goncalves , Andreas Horn , Vanja Vlasov , Frank Hertel , Andreas Husch

The segmentation of diseases is a popular topic explored by researchers in the field of machine learning. Brain tumors are extremely dangerous and require the utmost precision to segment for a successful surgery. Patients with tumors…

Image and Video Processing · Electrical Eng. & Systems 2022-04-05 Sanskriti Singh

Low-field magnetic resonance imaging (MRI) provides affordable access to diagnostic imaging but suffers from prolonged acquisition and limited image quality. Accelerated imaging can be achieved with k-space undersampling, while…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Daniel Tweneboah Anyimadu , Mohammed M. Abdelsamea , Ahmed Karam Eldaly

Magnetic resonance imaging (MRI) raw data, or k-Space data, is complex-valued, containing both magnitude and phase information. However, clinical and existing Artificial Intelligence (AI)-based methods focus only on magnitude images,…

Image and Video Processing · Electrical Eng. & Systems 2025-04-11 Moritz Rempe , Fabian Hörst , Helmut Becker , Marco Schlimbach , Lukas Rotkopf , Kevin Kröninger , Jens Kleesiek

Quantitative, volumetric analysis of Magnetic Resonance Imaging (MRI) is a fundamental way researchers study the brain in a host of neurological conditions including normal maturation and aging. Despite the availability of open-source brain…

Quantitative Methods · Quantitative Biology 2019-11-15 Aakash Kaku , Chaitra V. Hegde , Jeffrey Huang , Sohae Chung , Xiuyuan Wang , Matthew Young , Alireza Radmanesh , Yvonne W. Lui , Narges Razavian

The $k$-core decomposition is a fundamental primitive in many machine learning and data mining applications. We present the first distributed and the first streaming algorithms to compute and maintain an approximate $k$-core decomposition…

Data Structures and Algorithms · Computer Science 2018-11-27 Hossein Esfandiari , Silvio Lattanzi , Vahab Mirrokni

Deep learning networks are being developed in every stage of the MRI workflow and have provided state-of-the-art results. However, this has come at the cost of increased computation requirement and storage. Hence, replacing the networks…

Image and Video Processing · Electrical Eng. & Systems 2020-04-14 Balamurali Murugesan , Sricharan Vijayarangan , Kaushik Sarveswaran , Keerthi Ram , Mohanasankar Sivaprakasam

Segmenting a structural magnetic resonance imaging (MRI) scan is an important pre-processing step for analytic procedures and subsequent inferences about longitudinal tissue changes. Manual segmentation defines the current gold standard in…

Computer Vision and Pattern Recognition · Computer Science 2017-06-07 Alex Fedorov , Jeremy Johnson , Eswar Damaraju , Alexei Ozerin , Vince Calhoun , Sergey Plis

Neuroanatomical segmentation in magnetic resonance imaging (MRI) of the brain is a prerequisite for volume, thickness and shape measurements. This work introduces a new highly accurate and versatile method based on 3D convolutional neural…

Quantitative Methods · Quantitative Biology 2019-02-07 Philip Novosad , Vladimir Fonov , D. Louis Collins

Brain segmentation is a fundamental first step in neuroimage analysis. In the case of fetal MRI, it is particularly challenging and important due to the arbitrary orientation of the fetus, organs that surround the fetal head, and…

Skull stripping for brain MR images is a basic segmentation task. Although many methods have been proposed, most of them focused mainly on the adult MR images. Skull stripping for infant MR images is more challenging due to the small size…

Computer Vision and Pattern Recognition · Computer Science 2019-10-11 Qian Zhang , Li Wang , Xiaopeng Zong , Weili Lin , Gang Li , Dinggang Shen

A brain tumor, whether benign or malignant, can potentially be life threatening and requires painstaking efforts in order to identify the type, origin and location, let alone cure one. Manual segmentation by medical specialists can be…

Image and Video Processing · Electrical Eng. & Systems 2023-05-02 Ayan Gupta , Mayank Dixit , Vipul Kumar Mishra , Attulya Singh , Atul Dayal

Automatic identification of brain lesions from magnetic resonance imaging (MRI) scans of stroke survivors would be a useful aid in patient diagnosis and treatment planning. We propose a multi-modal multi-path convolutional neural network…

Computer Vision and Pattern Recognition · Computer Science 2019-05-28 Yunzhe Xue , Fadi G. Farhat , Olga Boukrina , A . M. Barrett , Jeffrey R. Binder , Usman W. Roshan , William W. Graves

K-Means clustering algorithm is one of the most commonly used clustering algorithms because of its simplicity and efficiency. K-Means clustering algorithm based on Euclidean distance only pays attention to the linear distance between…

Machine Learning · Computer Science 2022-06-13 Yiqun Zhang , Houbiao Li

Motion artifacts are a pervasive problem in MRI, leading to misdiagnosis or mischaracterization in population-level imaging studies. Current retrospective rigid intra-slice motion correction techniques jointly optimize estimates of the…

Image and Video Processing · Electrical Eng. & Systems 2023-11-17 Nalini M. Singh , Neel Dey , Malte Hoffmann , Bruce Fischl , Elfar Adalsteinsson , Robert Frost , Adrian V. Dalca , Polina Golland

Sparse Subspace Clustering (SSC) has been used extensively for subspace identification tasks due to its theoretical guarantees and relative ease of implementation. However SSC has quadratic computation and memory requirements with respect…

Computer Vision and Pattern Recognition · Computer Science 2017-04-14 Stephen Tierney , Yi Guo , Junbin Gao

Purpose: To implement a brain segmentation pipeline based on convolutional neural networks, which rapidly segments 3D volumes into 27 anatomical structures. To provide an extensive, comparative study of segmentation performance on various…

Image and Video Processing · Electrical Eng. & Systems 2020-08-12 Jonathan Zopes , Moritz Platscher , Silvio Paganucci , Christian Federau

One of the applications of center-based clustering algorithms such as K-Means is partitioning data points into K clusters. In some examples, the feature space relates to the underlying problem we are trying to solve, and sometimes we can…

Machine Learning · Computer Science 2020-09-23 Ali Hassani , Amir Iranmanesh , Mahdi Eftekhari , Abbas Salemi

Segmentation is one of the most important tasks in MRI medical image analysis and is often the first and the most critical step in many clinical applications. In brain MRI analysis, head segmentation is commonly used for measuring and…

Image and Video Processing · Electrical Eng. & Systems 2022-08-11 Haleh Akrami , Wenhui Cui , Anand A Joshi , Richard M. Leahy