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Single-cell RNA sequencing (scRNA-seq) provides a high throughput, quantitative and unbiased framework for scientists in many research fields to identify and characterize cell types within heterogeneous cell populations from various…

Quantitative Methods · Quantitative Biology 2022-09-28 Yeganeh Madadi , Aboozar Monavarfeshani , Hao Chen , W. Daniel Stamer , Robert W. Williams , Siamak Yousefi

A critical challenge in single-cell RNA sequencing (scRNA-seq) integration is resolving the tension between eliminating batch effects and maintaining biological fidelity. While recent evidence indicates that batch effects manifest…

Machine Learning · Computer Science 2026-05-19 Xichen Yan , Zelin Zang , Changxi Chi , Jingbo Zhou , Chang Yu , Jinlin Wu , Shenghui Cheng , Fuji Yang , Jiebo Luo , Zhen Lei , Stan Z. Li

Multiview clustering (MVC) segregates data samples into meaningful clusters by synthesizing information across multiple views. Moreover, deep learning-based methods have demonstrated their strong feature learning capabilities in MVC…

Machine Learning · Computer Science 2024-03-22 Hao Yang , Hua Mao , Wai Lok Woo , Jie Chen , Xi Peng

Multiple Instance Learning (MIL) has enabled weakly supervised analysis of whole-slide images (WSIs) in computational pathology. However, traditional MIL approaches often lose crucial contextual information, while transformer-based…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Xitong Ling , Minxi Ouyang , Xiaoxiao Li , Jiawen Li , Ying Chen , Yuxuan Sun , Xinrui Chen , Tian Guan , Xiaoping Liu , Yonghong He

We propose MatSci ML, a novel benchmark for modeling MATerials SCIence using Machine Learning (MatSci ML) methods focused on solid-state materials with periodic crystal structures. Applying machine learning methods to solid-state materials…

Learning dense visual representations without labels is an arduous task and more so from scene-centric data. We propose to tackle this challenging problem by proposing a Cross-view consistency objective with an Online Clustering mechanism…

Computer Vision and Pattern Recognition · Computer Science 2023-03-24 Thomas Stegmüller , Tim Lebailly , Behzad Bozorgtabar , Tinne Tuytelaars , Jean-Philippe Thiran

Flow cytometry mainly used for detecting the characteristics of a number of biochemical substances based on the expression of specific markers in cells. It is particularly useful for detecting membrane surface receptors, antigens, ions, or…

Machine Learning · Computer Science 2023-03-17 Yanhua Xu

Multi-view clustering aims at integrating complementary information from multiple heterogeneous views to improve clustering results. Existing multi-view clustering solutions can only output a single clustering of the data. Due to their…

Machine Learning · Computer Science 2019-11-27 Shaowei Wei , Jun Wang , Guoxian Yu , Carlotta , Xiangliang Zhang

Biclustering is a class of techniques that simultaneously clusters the rows and columns of a matrix to sort heterogeneous data into homogeneous blocks. Although many algorithms have been proposed to find biclusters, existing methods suffer…

Machine Learning · Statistics 2020-02-11 Michelle N. Ngo , Dustin S. Pluta , Alexander N. Ngo , Babak Shahbaba

Multiple clustering has gained significant attention in recent years due to its potential to reveal multiple hidden structures of data from different perspectives. The advent of deep multiple clustering techniques has notably advanced the…

Computer Vision and Pattern Recognition · Computer Science 2024-04-25 Jiawei Yao , Qi Qian , Juhua Hu

Combining information from different sources is a common way to improve classification accuracy in Brain-Computer Interfacing (BCI). For instance, in small sample settings it is useful to integrate data from other subjects or sessions in…

Machine Learning · Statistics 2013-10-24 Wojciech Samek , Alexander Binder , Klaus-Robert Müller

As the large amount of sequencing data accumulated in past decades and it is still accumulating, we need to handle the more and more sequencing data. As the fast development of the computing technologies, we now can handle a large amount of…

Other Quantitative Biology · Quantitative Biology 2021-01-05 Songting Shi

In the era of big data, it is common to have data with multiple modalities or coming from multiple sources, known as "multi-view data". Multi-view clustering provides a natural way to generate clusters from such data. Since different views…

Machine Learning · Computer Science 2016-11-08 Weixiang Shao , Lifang He , Chun-Ta Lu , Philip S. Yu

Multiple clustering aims to discover various latent structures of data from different aspects. Deep multiple clustering methods have achieved remarkable performance by exploiting complex patterns and relationships in data. However, existing…

Machine Learning · Computer Science 2024-11-07 Jiawei Yao , Qi Qian , Juhua Hu

Single-molecule spectroscopy (SMS) is an exceptionally sensitive technique, but its inherently limited photon budget produces noisy data that can readily lead to subjective analyses, fitting errors, and reduced statistical power, obscuring…

Biological Physics · Physics 2026-03-19 Michael Lovemore , Joshua Botha , Bertus van Heerden , Tjaart Kruger

Spectral clustering is an effective methodology for unsupervised learning. Most traditional spectral clustering algorithms involve a separate two-step procedure and apply the transformed new representations for the final clustering results.…

Computer Vision and Pattern Recognition · Computer Science 2022-12-05 Liangchen Liu , Qiuhong Ke , Chaojie Li , Feiping Nie , Yingying Zhu

Due to the lack of fine-grained annotation guidance, current Multiple Instance Learning (MIL) struggles to establish a robust causal relationship between Whole Slide Image (WSI) diagnosis and evidence sub-images, just like fully supervised…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Tianhang Nan , Yong Ding , Hao Quan , Deliang Li , Lisha Li , Guanghong Zhao , Xiaoyu Cui

In this paper, we propose a novel Joint framework for Deep Multi-view Clustering (DMJC), where multiple deep embedded features, multi-view fusion mechanism and clustering assignments can be learned simultaneously. Our key idea is that the…

Computer Vision and Pattern Recognition · Computer Science 2018-11-26 Bingqian Lin , Yuan Xie , Yanyun Qu , Cuihua Li , Xiaodan Liang

Food recommendation systems serve as pivotal components in the realm of digital lifestyle services, designed to assist users in discovering recipes and food items that resonate with their unique dietary predilections. Typically, multi-modal…

Information Retrieval · Computer Science 2025-02-28 Yixin Zhang , Xin Zhou , Qianwen Meng , Fanglin Zhu , Yonghui Xu , Zhiqi Shen , Lizhen Cui

In this paper, we introduce InSQuAD, designed to enhance the performance of In-Context Learning (ICL) models through Submodular Mutual Information} (SMI) enforcing Quality and Diversity among in-context exemplars. InSQuAD achieves this…

Machine Learning · Computer Science 2025-08-29 Souradeep Nanda , Anay Majee , Rishabh Iyer
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