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Lattice models or structures are geometrical objects with mathematical forms, that are used to represent physical systems. They have been used widely in diverse fields, namely, in condensed matter physics, to study degrees of freedom of…

Quantum Physics · Physics 2024-06-04 Kalyan Dasgupta

Diffusion generative models have emerged as a powerful framework for addressing problems in structural biology and structure-based drug design. These models operate directly on 3D molecular structures. Due to the unfavorable scaling of…

Biomolecules · Quantitative Biology 2024-05-10 Ian Dunn , David Ryan Koes

We present a new framework for the simultaneous optimiziation of both the topology as well as the relative density grading of cellular structures and materials, also known as lattices. Due to manufacturing constraints, the optimization…

Computational Engineering, Finance, and Science · Computer Science 2025-05-27 Jonathan Stollberg , Tarun Gangwar , Oliver Weeger , Dominik Schillinger

It has been observed that representations learned by distinct neural networks conceal structural similarities when the models are trained under similar inductive biases. From a geometric perspective, identifying the classes of…

Machine Learning · Computer Science 2024-03-21 Irene Cannistraci , Luca Moschella , Marco Fumero , Valentino Maiorca , Emanuele Rodolà

In this work we illustrate our novel quantitative simulation approach for dense amorphous polymer systems, as discussed in our previous work[Kulkarni et al., A Novel Approach for Lattice Simulations of Polymer Chains in Dense Amorphous…

Soft Condensed Matter · Physics 2008-05-06 Joydeep Mukherjee , Antony N. Beris

Latent space models for network data characterize each node through a vector of latent features whose pairwise similarities define the edge probabilities among the pairs of nodes. Although this formulation has led to successful…

Methodology · Statistics 2026-04-06 Federico Pavone , Daniele Durante , Robin J. Ryder

We present a novel algorithm that allows one to obtain temperature dependent properties of quantum lattice models in the thermodynamic limit from exact diagonalization of small clusters. Our Numerical Linked Cluster (NLC) approach provides…

Strongly Correlated Electrons · Physics 2007-05-23 Marcos Rigol , Tyler Bryant , Rajiv R. P. Singh

There are many surprising and perhaps counter-intuitive properties of optimization of deep neural networks. We propose and experimentally verify a unified phenomenological model of the loss landscape that incorporates many of them. High…

Machine Learning · Computer Science 2019-06-12 Stanislav Fort , Stanislaw Jastrzebski

Networked structures arise in a wide array of different contexts such as technological and transportation infrastructures, social phenomena, and biological systems. These highly interconnected systems have recently been the focus of a great…

Statistical Mechanics · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Romualdo Pastor-Satorras , Alessandro Vespignani

Shaken optical lattices permit to coherently modify the tunneling of particles in a controllable manner. We introduce a general relation between the geometry of shaken lattices and their admissible effective dynamics. Using three different…

Quantum Physics · Physics 2015-09-15 Albert Verdeny , Florian Mintert

Topological lattices have recently generated a great deal of interest based on the unique mechanical properties rooted in their topological polarization, including the ability to support localized modes at certain floppy edges. The study of…

Applied Physics · Physics 2021-12-08 Mohammad Charara , Kai Sun , Xiaoming Mao , Stefano Gonella

In this letter we introduce a novel approach to Hamiltonian tomography of non-interacting tight-binding photonic lattices. To begin with, we prove that the matrix element of the low-energy effective Hamiltonian between sites $i$ and $j$ may…

Quantum Gases · Physics 2017-07-05 Ruichao Ma , Clai Owens , Aman LaChapelle , David I. Schuster , Jonathan Simon

The growing skill in the synthesis processes of new materials has intensified the interest in exploring the properties of systems modeled by more complex lattices. Two-dimensional super-honeycomb lattices, have been investigated in metallic…

Mesoscale and Nanoscale Physics · Physics 2023-02-03 A. B. Felix de Souza , L. Spreafico , D. Faria , A. Latgé

In this contribution, we present a new Materials Knowledge System framework for microstructure-sensitive predictions of effective stress--strain responses in composite materials. The model is developed for composites with a wide range of…

Materials Science · Physics 2018-12-17 Marat I. Latypov , Laszlo S. Toth , Surya R. Kalidindi

An optimization method for the design of multi-lattice structures satisfying local buckling constraints is proposed in this paper. First, the concept of free material optimization is introduced to find an optimal elastic tensor distribution…

Computational Geometry · Computer Science 2021-11-10 Xingtong Yang , Xinzhuo Hu , Liangchao Zhu , Ming Li

We present an unconstrained tree tensor network approach to the study of lattice gauge theories in two spatial dimensions showing how to perform numerical simulations of theories in presence of fermionic matter and four-body magnetic terms,…

Quantum Physics · Physics 2021-02-01 Timo Felser , Pietro Silvi , Mario Collura , Simone Montangero

The interference patterns of ultracold atoms, observed after ballistic expansion from optical lattices, encode essential information about strongly correlated lattice systems, including phase coherence and non-local correlations. While the…

Dynamic networks are used in a variety of fields to represent the structure and evolution of the relationships between entities. We present a model which embeds longitudinal network data as trajectories in a latent Euclidean space. A Markov…

Methodology · Statistics 2020-05-19 Daniel K. Sewell , Yuguo Chen

Allosteric effects are often underlying the activity of proteins and elucidating generic design aspects and functional principles which are unique to allosteric phenomena represents a major challenge. Here an approach which consists in the…

Biological Physics · Physics 2017-02-28 Holger Flechsig

Controlling laser-induced pattern formation remains a long-standing challenge. A key advance was recognising the pivotal role of intrinsic feedback mechanisms in self-organisation, which enabled self-similar patterns with long-range order…