Related papers: Pebble trees
Given a tree $T$, its path polytope is the convex hull of the edge indicator vectors for the paths between any two distinct leaves in $T$. These polytopes arise naturally in polyhedral geometry and applications, such as phylogenetics,…
We study a class of combinatorial objects that we call "decorated trees". These consist of vertices, arrows and edges, where each edge is decorated by two integers (one near each of its endpoints), each arrow is decorated by an integer, and…
This paper uses combinatorics and group theory to answer questions about the assembly of icosahedral viral shells. Although the geometric structure of the capsid (shell) is fairly well understood in terms of its constituent subunits, the…
The notions of convexity and convex polytopes are introduced in the setting of tropical geometry. Combinatorial types of tropical polytopes are shown to be in bijection with regular triangulations of products of two simplices. Applications…
Graph pebbling is a game played on graphs with pebbles on their vertices. A pebbling move removes two pebbles from one vertex and places one pebble on an adjacent vertex. A configuration $C$ is a supply of pebbles at various vertices of a…
The tree-level scattering amplitudes for $\text{tr}(\phi^3)$ theory can be interpreted as a sum over the vertices of a polytope known as the associahedron. For each graph $G$, there exists a natural generalisation of the associahedron,…
We give a simple description of the face poset of the biassociahedra that generalizes, in a straightforward manner, the description of the faces of the Stasheff's associahedra via planar trees.
The reversible pebble game is a combinatorial game played on rooted DAGs. This game was introduced by Bennett (1989) motivated by applications in designing space efficient reversible algorithms. Recently, Chan (2013) showed that the…
An associahedron is a polytope whose vertices correspond to triangulations of a convex polygon and whose edges correspond to flips between them. Using labeled polygons, C. Hohlweg and C. Lange constructed various realizations of the…
The phylogenetic tree space, introduced by Billera, Holmes, and Vogtmann, is a cone over a simplicial complex. In this short article, we construct this complex from local gluings of classical polytopes, the associahedron and the…
Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…
We exhibit an identity of abstract simplicial complexes between the well-studied complex of trees and the reduced minimal nested set complex of the partition lattice. We conclude that the order complex of the partition lattice can be…
We prove that every simple polygon contains a degree 3 tree encompassing a prescribed set of vertices. We give tight bounds on the minimal number of degree 3 vertices. We apply this result to reprove a result from Bose et al. that every set…
We give a precise description of combed trees in terms of Kelly-Mac Lane graphs. We show that any combed tree is uniquely expressed as an allowable Kelly-Mac Lane graph of a certain shape. Conversely, we show that any such Kelly-Mac Lane…
Cobweb posets uniquely represented by directed acyclic graphs are such a generalization of the Fibonacci tree that allows joint combinatorial interpretation for all of them under admissibility condition. This interpretation was derived in…
Polytope numbers for a polytope are a sequence of nonnegative integers that are defined by the facial information of a polytope. Every polygon is triangulable and a higher dimensional analogue of this fact states that every polytope is…
The straight skeleton of a polygon is the geometric graph obtained by tracing the vertices during a mitered offsetting process. It is known that the straight skeleton of a simple polygon is a tree, and one can naturally derive directions on…
We exhibit several posets arising from commutative algebra, order theory, tropical convexity as potential face posets of tropical polyhedra, and we clarify their inclusion relations. We focus on monomial tropical polyhedra, and deduce how…
To a definable subset of Z_p^n (or to a scheme of finite type over Z_p) one can associate a tree in a natural way. It is known that the corresponding Poincare series P(X) = \sum_i N_i X^i is rational, where N_i is the number of nodes of the…
Trees are partial orderings where every element has a linearly ordered set of smaller elements. We define and study several natural notions of completeness of trees, extending Dedekind completeness of linear orders and Dedekind-MacNeille…