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We derived a number of numerical methods to treat biomolecular systems with multiple time scales. Based on the splitting of the operators associated with the slow-varying and fast-varying forces, new multiple time-stepping (MTS) methods are…

Numerical Analysis · Mathematics 2015-01-15 Chao Liang , Xiaolan Yuan , Xiantao Li

Compartmentalised biochemical reactions are a ubiquitous building block of biological systems. The interplay between chemical and compartmental dynamics can drive rich and complex dynamical behaviors that are difficult to analyse…

Molecular Networks · Quantitative Biology 2023-06-16 Tommaso Bianucci , Christoph Zechner

In order to describe few-body scattering in the case of the Coulomb interaction, an approach based on splitting the reaction potential into a finite range part and a long range tail part is presented. The solution to the Schr\"odinger…

Atomic Physics · Physics 2020-01-01 E. Yarevsky , S. L. Yakovlev , N. Elander , Åsa Larson

The non-conservation of entanglement, when two or more particles interact, sets it apart from other dynamical quantities like energy and momentum. It does not allow the interpretation of the subtle dynamics of entanglement as a flow of this…

An approach based on splitting the reaction potential into a finite range part and a long range tail part to describe few-body scattering in the case of a Coulombic interaction is proposed. The solution to the Schr\"odinger equation for the…

Atomic Physics · Physics 2016-06-13 E. Yarevsky , S. L. Yakovlev , N. Elander

The motion of charged particles in weakly varying electromagnetic fields is described using a perturbation method. This provides a systematic and physically transparent description of the particle motion on fast and slow spatio-temporal…

Plasma Physics · Physics 2014-05-15 D. S. Sortland , O. E. Garcia

This paper proposes a charge-conserving, variational, spatio-temporal discretization for the drift-kinetic Vlasov-Maxwell system, utilizing finite-elements for the electromagnetic fields and the particle-in-cell approach for the Vlasov…

Plasma Physics · Physics 2019-10-09 Eero Hirvijoki

The equations of the temperature-accelerated molecular dynamics (TAMD) method for the calculations of free energies and partition functions are analyzed. Specifically, the exponential convergence of the law of these stochastic processes is…

Probability · Mathematics 2018-08-01 Gabriel Stoltz , Eric Vanden-Eijnden

The electron and photon transport processes in spectroscopy techniques described by the invariant embedding theory is here revisited. We report a convergence method to obtain closed analytical solutions to the 3D integro-differential…

Materials Science · Physics 2010-06-22 Carlos Figueroa , Horacio Brizuela , Silvia P. Heluani

We propose a methodology for studying the performance of common splitting methods through semidefinite programming. We prove tightness of the methodology and demonstrate its value by presenting two applications of it. First, we use the…

Optimization and Control · Mathematics 2020-05-01 Ernest K. Ryu , Adrien B. Taylor , Carolina Bergeling , Pontus Giselsson

Energy conserving particle-in-cell schemes are constructed for a class of reduced relativistic Vlasov--Maxwell equations of laser-plasma interaction. Discrete Poisson equation is also satisfied by the numerical solution. Specifically,…

Numerical Analysis · Mathematics 2022-11-30 Yingzhe Li

Lorentz invariant structure-preserving algorithms possess reference-independent secular stability, which is vital for simulating relativistic multi-scale dynamical processes. The splitting method has been widely used to construct…

Plasma Physics · Physics 2021-06-02 Yulei Wang , Jian Liu , Yang He

An error analysis is presented for explicit partitioned Runge-Kutta methods and multirate methods applied to conservation laws. The interfaces, across which different methods or time steps are used, lead to order reduction of the schemes.…

Numerical Analysis · Mathematics 2013-10-29 Willem Hundsdorfer , David I. Ketcheson , Igor Savostianov

Particle methods are less computationally efficient than grid based numerical solution of the Navier Stokes equation. However, they have important advantages including rigorous mass conservation, momentum conservation and isotropy. In…

Fluid Dynamics · Physics 2024-06-26 Paul Meakin , Zhijie Xu

Interval approaches for the reachability analysis of initial value problems for sets of classical ordinary differential equations have been investigated and implemented by many researchers during the last decades. However, there exist…

Systems and Control · Electrical Eng. & Systems 2021-01-15 Andreas Rauh , Julia Kersten

We consider one dimensional many-particle systems that exhibit kinematically protected single-particle excitations over their ground states. We show that momentum and time-resolved 4-point functions of operators that create such excitations…

Strongly Correlated Electrons · Physics 2025-10-08 M. Fava , S. Gopalakrishnan , R. Vasseur , S. A. Parameswaran , F. H. L. Essler

This contribution is dedicated to the exploration of exponential operator splitting methods for the time integration of evolution equations. It entails the review of previous achievements as well as the depiction of novel results. The…

Numerical Analysis · Mathematics 2024-10-18 Sergio Blanes , Fernando Casas , Cesareo Gonzalez , Mechthild Thalhammer

In this paper we study the continuous coagulation and multiple fragmentation equation for the mean-field description of a system of particles taking into account the combined effect of the coagulation and the fragmentation processes in…

Analysis of PDEs · Mathematics 2018-11-16 Prasanta Kumar Barik

This work proposes a suite of numerical techniques to facilitate the design of structure-preserving integrators for nonlinear dynamics. The celebrated LaBudde-Greenspan integrator and various energy-momentum schemes adopt a difference…

Numerical Analysis · Mathematics 2023-05-17 Ju Liu

This work reviews recent advances in the analytical treatment of the continuum spectrum of correlated few-body non-relativistic Coulomb systems. The exactly solvable two-body problem serves as an introduction to the non-separable…

Mathematical Physics · Physics 2007-05-23 Jamal Berakdar