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Cell assemblies manipulation by optogenetics is pivotal to advance neuroscience and neuroengineering. In in vivo applications, photostimulation often broadly addresses a population of cells simultaneously, leading to feed-forward and to…

Neurons and Cognition · Quantitative Biology 2016-04-08 Rocco Pulizzi , Gabriele Musumeci , Chris Van Den Haute , Sebastian Van De Vijver , Veerle Baekelandt , Michele Giugliano

Neurons are the central biological objects in understanding how the brain works. The famous Hodgkin-Huxley model, which describes how action potentials of a neuron are initiated and propagated, consists of four coupled nonlinear…

Neurons and Cognition · Quantitative Biology 2010-02-01 William Hanan , Dhagash Mehta , Guillaume Moroz , Sepanda Pouryahya

We analyze the dynamics of the FitzHugh-Nagumo (FHN) model in the presence of colored noise and a periodic signal. Two cases are considered: (i) the dynamics of the membrane potential is affected by the noise, (ii) the slow dynamics of the…

Biological Physics · Physics 2009-11-13 D. Valenti , G. Augello , B. Spagnolo

This paper focuses on analysis and design of time-varying complex networks having fractional order dynamics. These systems are key in modeling the complex dynamical processes arising in several natural and man made systems. Notably,…

Signal Processing · Electrical Eng. & Systems 2018-09-17 Gaurav Gupta , Sergio Pequito , Paul Bogdan

In biochemical signaling, information is often encoded in oscillatory signals. However, the advantages of such a coding strategy over an amplitude encoding scheme of constant signals remain unclear. Here we study the dynamics of a simple…

Subcellular Processes · Quantitative Biology 2012-03-09 Filipe Tostevin , Wiet de Ronde , Pieter Rein ten Wolde

Developing networks of neural systems can exhibit spontaneous, synchronous activities called neural bursts, which can be important in the organization of functional neural circuits. Before the network matures, the activity level of a burst…

Neurons and Cognition · Quantitative Biology 2017-05-24 Chih-Hsu Huang , Yu-Ting Huang , Chun-Chung Chen , C. K. Chan

Time is at a premium for recurrent network dynamics, and particularly so when they are stochastic and correlated: the quality of inference from such dynamics fundamentally depends on how fast the neural circuit generates new samples from…

Neurons and Cognition · Quantitative Biology 2014-04-24 Guillaume Hennequin , Laurence Aitchison , Máté Lengyel

We propose a novel discrete model of central pattern generators (CPG), neuronal ensembles generating rhythmic activity. The model emphasizes the role of nonsynaptic interactions and the diversity of electrical properties in nervous systems.…

Neural and Evolutionary Computing · Computer Science 2017-05-10 Nikolay Bazenkov , Varvara Dyakonova , Oleg Kuznetsov , Dmitri Sakharov , Dmitry Vorontsov , Liudmila Zhilyakova

The stochastic FitzHugh-Nagumo model with time delayed-feedback is often studied in excitable regime to demonstrate the time-delayed control of coherence resonance. Here, we show that the impact of time-delayed feedback in the…

Adaptation and Self-Organizing Systems · Physics 2023-05-24 Vladimir V. Semenov , Andrei V. Bukh , Nadezhda Semenova

The temporal behaviour of segmentation clock oscillations show phase synchrony via mean field like coupling of delta protein restricting to nearest neighbours only, in a configuration of cells arranged in a regular three dimensional array.…

Recurrent neural networks (RNNs) are machine learning models widely used for learning temporal relationships. Current state-of-the-art RNNs use integrating or spiking neurons -- two classes of computing units whose outputs depend directly…

Neural and Evolutionary Computing · Computer Science 2025-06-10 Peter DelMastro , Arjun Karuvally , Hananel Hazan , Hava Siegelmann , Edward Rietman

Recent studies have shown that functional brain brainwork is dynamic even during rest. A common approach to modeling the brain network in whole brain resting-state fMRI is to compute the correlation between anatomical regions via sliding…

We study an excitable active rotator with slowly adapting nonlinear feedback and noise. Depending on the adaptation and the noise level, this system may display noise-induced spiking, noise-perturbed oscillations, or stochastic busting. We…

Adaptation and Self-Organizing Systems · Physics 2020-08-26 Igor Franović , Serhiy Yanchuk , Sebastian Eydam , Iva Bačić , Matthias Wolfrum

We study the noise characteristics of stochastic oscillations in protein number dynamics of simple genetic oscillatory systems. Using the three-component negative feedback transcription regulatory system called the repressilator as a…

Molecular Networks · Quantitative Biology 2015-03-13 Byungjoon Min , K. -I. Goh , I. -M. Kim

Entrainment experiments on the vertebrate segmentation clock have revealed that embryonic oscillators actively change their internal frequency to adapt to the driving signal. This is neither consistent with a one-dimensional clock model nor…

Biological Physics · Physics 2024-08-27 Christian Mauffette Denis , Paul François

Oscillatory gene circuits are ubiquitous to biology and are involved in fundamental processes of cell cycle, circadian rhythms and developmental systems. The synthesis of small, non-natural oscillatory genetic circuits have been…

Molecular Networks · Quantitative Biology 2020-02-05 Yash Joshi , Yash Kiran Jawale , Chaitanya Anil Athale

Experimental fMRI studies have shown that spontaneous brain activity i.e. in the absence of any external input, exhibit complex spatial and temporal patterns of co-activity between segregated brain regions. These so-called large-scale…

Adaptation and Self-Organizing Systems · Physics 2015-06-23 Vesna Vuksanović , Philipp Hövel

Neural encoding of objects and cognitive states remains an elusive yet crucial aspect of brain function. While traditional feed-forward machine learning neural networks have enormous potential to encode information, modern architectures…

Neurons and Cognition · Quantitative Biology 2025-03-10 Alexander Pei

Neurons in the brain behave as non-linear oscillators, which develop rhythmic activity and interact to process information. Taking inspiration from this behavior to realize high density, low power neuromorphic computing will require huge…

Traditional artificial neural networks consist of nodes with non-oscillatory dynamics. Biological neural networks, on the other hand, consist of oscillatory components embedded in an oscillatory environment. Motivated by this feature of…

Neurons and Cognition · Quantitative Biology 2026-03-17 Mark A. Kramer