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Graph Neural Networks (GNNs) are powerful deep learning methods for Non-Euclidean data. Popular GNNs are message-passing algorithms (MPNNs) that aggregate and combine signals in a local graph neighborhood. However, shallow MPNNs tend to…

Machine Learning · Statistics 2022-11-08 Ningyuan Huang , Soledad Villar , Carey E. Priebe , Da Zheng , Chengyue Huang , Lin Yang , Vladimir Braverman

Graph matching refers to finding node correspondence between graphs, such that the corresponding node and edge's affinity can be maximized. In addition with its NP-completeness nature, another important challenge is effective modeling of…

Computer Vision and Pattern Recognition · Computer Science 2020-12-01 Runzhong Wang , Junchi Yan , Xiaokang Yang

Scalable general-purpose representations of the built environment are crucial for geospatial artificial intelligence applications. This paper introduces S2Vec, a novel self-supervised framework for learning such geospatial embeddings. S2Vec…

Social and Information Networks · Computer Science 2026-01-08 Shushman Choudhury , Elad Aharoni , Chandrakumari Suvarna , Iveel Tsogsuren , Abdul Rahman Kreidieh , Chun-Ta Lu , Neha Arora

Graph Neural Networks (GNNs) have shown promising results in various tasks, among which link prediction is an important one. GNN models usually follow a node-centric message passing procedure that aggregates the neighborhood information to…

Machine Learning · Computer Science 2022-01-17 Baole Ai , Zhou Qin , Wenting Shen , Yong Li

Knowledge Graph Embedding (KGE) aims to represent entities and relations of knowledge graph in a low-dimensional continuous vector space. Recent works focus on incorporating structural knowledge with additional information, such as entity…

Computation and Language · Computer Science 2018-08-14 Kai Wang , Yu Liu , Xiujuan Xu , Dan Lin

Embedding plays a key role in modern recommender systems because they are virtual representations of real-world entities and the foundation for subsequent decision-making models. In this paper, we propose a novel embedding update mechanism,…

Information Retrieval · Computer Science 2024-09-30 Cong Xu , Jun Wang , Jianyong Wang , Wei Zhang

Unsupervised attributed graph representation learning is challenging since both structural and feature information are required to be represented in the latent space. Existing methods concentrate on learning latent representation via…

Machine Learning · Computer Science 2021-04-28 Zelin Zang , Siyuan Li , Di Wu , Jianzhu Guo , Yongjie Xu , Stan Z. Li

Despite the success of the Sylvester equation empowered methods on various graph mining applications, such as semi-supervised label learning and network alignment, there also exists several limitations. The Sylvester equation's inability of…

Machine Learning · Computer Science 2022-06-22 Boxin Du , Changhe Yuan , Fei Wang , Hanghang Tong

The network embedding problem aims to map nodes that are similar to each other to vectors in a Euclidean space that are close to each other. Like centrality analysis (ranking) and community detection, network embedding is in general…

Social and Information Networks · Computer Science 2019-04-26 Cheng-Shang Chang , Ching-Chu Huang , Chia-Tai Chang , Duan-Shin Lee , Ping-En Lu

In the real world, networks often contain multiple relationships among nodes, manifested as the heterogeneity of the edges in the networks. We convert the heterogeneous networks into multiple views by using each view to describe a specific…

Social and Information Networks · Computer Science 2021-03-15 Lu Wang , Yu Song , Hong Huang , Fanghua Ye , Xuanhua Shi , Hai Jin

Knowledge graph (KG) embedding aims at embedding entities and relations in a KG into a lowdimensional latent representation space. Existing KG embedding approaches model entities andrelations in a KG by utilizing real-valued ,…

Machine Learning · Computer Science 2021-03-24 Chengjin Xu , Mojtaba Nayyeri , Yung-Yu Chen , Jens Lehmann

Masked graph autoencoder (MGAE) has emerged as a promising self-supervised graph pre-training (SGP) paradigm due to its simplicity and effectiveness. However, existing efforts perform the mask-then-reconstruct operation in the raw data…

Machine Learning · Computer Science 2023-04-07 Wenxuan Tu , Qing Liao , Sihang Zhou , Xin Peng , Chuan Ma , Zhe Liu , Xinwang Liu , Zhiping Cai

Graph autoencoders (AE) and variational autoencoders (VAE) recently emerged as powerful node embedding methods, with promising performances on challenging tasks such as link prediction and node clustering. Graph AE, VAE and most of their…

Machine Learning · Computer Science 2019-10-03 Guillaume Salha , Romain Hennequin , Michalis Vazirgiannis

In this paper, we explore the capability of both the Adjacency Spectral Embedding (ASE) and the Graph Encoder Embedding (GEE) for capturing an embedded pseudo-clique structure in the random dot product graph setting. In both theory and…

Methodology · Statistics 2025-12-08 Tong Qi , Vince Lyzinski

Traditional Machine Learning (ML) methods require large amounts of data to perform well, limiting their applicability in sparse or incomplete scenarios and forcing the usage of additional synthetic data to improve the model training. To…

Machine Learning · Computer Science 2025-11-18 Rosario Napoli , Giovanni Lonia , Antonio Celesti , Massimo Villari , Maria Fazio

The graph embedding (GE) methods have been widely applied for dimensionality reduction of hyperspectral imagery (HSI). However, a major challenge of GE is how to choose proper neighbors for graph construction and explore the spatial…

Computer Vision and Pattern Recognition · Computer Science 2018-12-27 Hong Huang , Guangyao Shi , Haibo He , Yule Duan , Fulin Luo

Many problems such as node classification and link prediction in network data can be solved using graph embeddings. However, it is difficult to use graphs to capture non-binary relations such as communities of nodes. These kinds of complex…

Social and Information Networks · Computer Science 2022-01-27 Sepideh Maleki , Donya Saless , Dennis P. Wall , Keshav Pingali

Graph representation learning is of paramount importance for a variety of graph analytical tasks, ranging from node classification to community detection. Recently, graph convolutional networks (GCNs) have been successfully applied for…

Machine Learning · Computer Science 2020-11-10 Fenyu Hu , Yanqiao Zhu , Shu Wu , Weiran Huang , Liang Wang , Tieniu Tan

Single-cell spatial transcriptomics (ST) offers a unique approach to measuring gene expression profiles and spatial cell locations simultaneously. However, most existing ST methods assume that cells in closer spatial proximity exhibit more…

Genomics · Quantitative Biology 2025-06-10 Xiongtao Xiao , Xiaofeng Chen , Feiyan Jiang , Songming Zhang , Wenming Cao , Cheng Tan , Zhangyang Gao , Zhongshan Li

Graphs are ubiquitous in real-world scenarios and encompass a diverse range of tasks, from node-, edge-, and graph-level tasks to transfer learning. However, designing specific tasks for each type of graph data is often costly and lacks…

Machine Learning · Computer Science 2024-03-22 Yulan Hu , Sheng Ouyang , Zhirui Yang , Ge Chen , Junchen Wan , Xiao Wang , Yong Liu