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High-throughput solid-state nanopore experiments generate continuous MHz-rate data streams in which only a small fraction of data contains informative molecular information. This creates storage and processing bottlenecks that limit…

The scale of scientific High Performance Computing (HPC) and High Throughput Computing (HTC) has increased significantly in recent years, and is becoming sensitive to total energy use and cost. Energy-efficiency has thus become an important…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-10-14 David Abdurachmanov , Peter Elmer , Giulio Eulisse , Robert Knight , Tapio Niemi , Jukka K. Nurminen , Filip Nyback , Goncalo Pestana , Zhonghong Ou , Kashif Khan

Within the next decade, experimental High Energy Physics (HEP) will enter a new era of scientific discovery through a set of targeted programs recommended by the Particle Physics Project Prioritization Panel (P5), including the upcoming…

Data Analysis, Statistics and Probability · Physics 2022-03-23 S. C. Tognini , P. Canal , T. M. Evans , G. Lima , A. L. Lund , S. R. Johnson , S. Y. Jun , V. R. Pascuzzi , P. K. Romano

Data preservation is a mandatory specification for any present and future experimental facility and it is a cost-effective way of doing fundamental research by exploiting unique data sets in the light of the continuously increasing…

The High Energy Physics (HEP) experiments, such as those at the Large Hadron Collider (LHC), traditionally consume large amounts of CPU cycles for detector simulations and data analysis, but rarely use compute accelerators such as GPUs. As…

High Energy Physics - Experiment · Physics 2022-03-17 Zhihua Dong , Heather Gray , Charles Leggett , Meifeng Lin , Vincent R. Pascuzzi , Kwangmin Yu

One of the challenges of high granularity calorimeters, such as that to be built to cover the endcap region in the CMS Phase-2 Upgrade for HL-LHC, is that the large number of channels causes a surge in the computing load when clustering…

Instrumentation and Detectors · Physics 2020-01-29 Marco Rovere , Ziheng Chen , Antonio Di Pilato , Felice Pantaleo , Chris Seez

Data cubes are widely used as a powerful tool to provide multidimensional views in data warehousing and On-Line Analytical Processing (OLAP). However, with increasing data sizes, it is becoming computationally expensive to perform data cube…

Databases · Computer Science 2013-11-25 Zhengkui Wang , Yan Chu , Kian-Lee Tan , Divyakant Agrawal , Amr EI Abbadi , Xiaolong Xu

Data processing frameworks are an essential part of HEP experiments' software stacks. Frameworks provide a means by which code developers can undertake the essential tasks of physics data processing, accessing relevant inputs and storing…

Distributed systems that manage and process graph-structured data internally solve a graph partitioning problem to minimize their communication overhead and query run-time. Besides computational complexity -- optimal graph partitioning is…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-03-24 Ruben Mayer , Hans-Arno Jacobsen

The data processing model for the CDF experiment is described. Data processing reconstructs events from parallel data streams taken with different combinations of physics event triggers and further splits the events into datasets of…

The effective utilization at scale of complex machine learning (ML) techniques for HEP use cases poses several technological challenges, most importantly on the actual implementation of dedicated end-to-end data pipelines. A solution to…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-17 Matteo Migliorini , Riccardo Castellotti , Luca Canali , Marco Zanetti

Several important and unique experimental high-energy physics programmes at a variety of facilities are coming to an end, including those at HERA, the B-factories and the Tevatron. The wealth of physics data from these experiments is the…

High Energy Physics - Experiment · Physics 2015-06-05 David M. South

Data processing frameworks such as Apache Beam and Apache Spark are used for a wide range of applications, from logs analysis to data preparation for DNN training. It is thus unsurprising that there has been a large amount of work on…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-07 Ubaid Ullah Hafeez , Martin Maas , Mustafa Uysal , Richard McDougall

A first differentiable analysis pipeline is presented for an example high-energy physics (HEP) use case with publicly available collision data from the Compact Muon Solenoid detector at the Large Hadron Collider. The pipeline combines tools…

High Energy Physics - Experiment · Physics 2025-08-27 Mohamed Aly , Lino Gerlach

The continuous growth of data production in almost all scientific areas raises new problems in data access and management, especially in a scenario where the end-users, as well as the resources that they can access, are worldwide…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-08-16 Tommaso Tedeschi , Diego Ciangottini , Marco Baioletti , Valentina Poggioni , Daniele Spiga , Loriano Storchi , Mirco Tracolli

This chapter introduces the state-of-the-art in the emerging area of combining High Performance Computing (HPC) with Big Data Analysis. To understand the new area, the chapter first surveys the existing approaches to integrating HPC with…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-01-01 Yuankun Fu , Fengguang Song

Data variety is one of the most important features of Big Data. Data variety is the result of aggregating data from multiple sources and uneven distribution of data. This feature of Big Data causes high variation in the consumption of…

Performance · Computer Science 2021-02-09 Hossein Ahmadvand , Fouzhan Foroutan , Mahmood Fathy

HEP Analysis Facility is a cluster designed and implemented in Scientific Linux Cern 5.5 to grant High Energy Physics researchers one place where they can go to undertake a particular task or to provide a parallel processing architecture in…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-13 Vivek Chalotra , Anju Bhasin , Anik Gupta , Sanjeev Singh Sambyal

The field of high-energy physics (HEP), along with many scientific disciplines, is currently experiencing a dramatic influx of new methodologies powered by modern machine learning techniques. Over the last few years, a growing body of HEP…

High Energy Physics - Phenomenology · Physics 2019-10-22 Benjamin Nachman , Chase Shimmin

With the rise of artificial intelligence in recent years, Deep Neural Networks (DNNs) have been widely used in many domains. To achieve high performance and energy efficiency, hardware acceleration (especially inference) of DNNs is…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-17 Linghao Song , Jiachen Mao , Youwei Zhuo , Xuehai Qian , Hai Li , Yiran Chen
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