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Molecular dynamics simulation is a proven technique for computing and visualizing the time-resolved motion of macromolecules at atomic resolution. The MDsrv is a tool that streams MD trajectories and displays them interactively in web…

In this work, we present a multiscale kinetic framework for consensus-based image segmentation. By interpreting an image as a system of interacting particles, each pixel is characterised by its spatial position and an internal feature…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Horacio Tettamanti , Giulia Guicciardi , Mattia Zanella

Recently, many methods to interpret and visualize deep neural network predictions have been proposed and significant progress has been made. However, a more class-discriminative and visually pleasing explanation is required. Thus, this…

Computer Vision and Pattern Recognition · Computer Science 2020-01-06 Dasom Seo , Kanghan Oh , Il-Seok Oh

We developed a computer vision-based methodology to achieve precise 3D segmentation and tracking of superbubbles within magnetohydrodynamic simulations of the supernova-driven interstellar medium. Leveraging advanced 3D transformer models,…

Astrophysics of Galaxies · Physics 2026-03-31 Jing-Wen Chen , Alex S. Hill , Anna Ordog , Rebecca A. Booth , Mohamed S. Shehata

Image-based simulation, the use of 3D images to calculate physical quantities, fundamentally relies on image segmentation to create the computational geometry. However, this process introduces image segmentation uncertainty because there is…

Computational Engineering, Finance, and Science · Computer Science 2021-09-20 Michael C. Krygier , Tyler LaBonte , Carianne Martinez , Chance Norris , Krish Sharma , Lincoln N. Collins , Partha P. Mukherjee , Scott A. Roberts

Rapidly growing data sizes of scientific simulations pose significant challenges for interactive visualization and analysis techniques. In this work, we propose a compact probabilistic representation to interactively visualize large…

Graphics · Computer Science 2020-10-16 Tobias Rapp , Christoph Peters , Carsten Dachsbacher

Spatial prediction refers to the estimation of unobserved values from spatially distributed observations. Although recent advances have improved the capacity to model diverse observation types, adoption in practice remains limited in…

Machine Learning · Statistics 2025-10-10 Yuta Shikuri , Hironori Fujisawa

The interactions between parameters, model structure, and outputs can determine what inferences, predictions, and control strategies are possible for a given system. Parameter space reduction and parameter estimation---and, more generally,…

Dynamical Systems · Mathematics 2018-02-16 Andrew F. Brouwer , Marisa C. Eisenberg

We propose a novel superpixel-based multi-view convolutional neural network for semantic image segmentation. The proposed network produces a high quality segmentation of a single image by leveraging information from additional views of the…

Computer Vision and Pattern Recognition · Computer Science 2017-04-27 Yang He , Wei-Chen Chiu , Margret Keuper , Mario Fritz

This paper proposes a visual analytics framework that addresses the complex user interactions required through a command-line interface to run analyses in distributed data analysis systems. The visual analytics framework facilitates the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-12 Abdullah-Al-Raihan Nayeem , Mohammed Elshambakey , Todd Dobbs , Huikyo Lee , Daniel Crichton , Yimin Zhu , Chanachok Chokwitthaya , William J. Tolone , Isaac Cho

All simulation approaches eventually face limits in computational scalability when applied to large spatiotemporal domains. This challenge becomes especially apparent in molecular-level particle simulations, where high spatial and temporal…

Computational Physics · Physics 2025-10-23 Matthias Busch , Gregor Häfner , Jiayu Xie , Marius Tacke , Marcus Müller , Christian J. Cyron , Roland C. Aydin

Semantic understanding of scenes in three-dimensional space (3D) is a quintessential part of robotics oriented applications such as autonomous driving as it provides geometric cues such as size, orientation and true distance of separation…

Computer Vision and Pattern Recognition · Computer Science 2019-11-01 Kartik Srivastava , Akash Kumar Singh , Guruprasad M. Hegde

The random walker method for image segmentation is a popular tool for semi-automatic image segmentation, especially in the biomedical field. However, its linear asymptotic run time and memory requirements make application to 3D datasets of…

Computer Vision and Pattern Recognition · Computer Science 2022-08-24 Dominik Drees , Florian Eilers , Xiaoyi Jiang

Though the mediums for visualization are limited, the potential dimensions of a dataset are not. In many areas of scientific study, understanding the correlations between those dimensions and their uncertainties is pivotal to mining useful…

Astrophysics · Physics 2009-02-25 Steve Haroz , Kwan-Liu Ma , Katrin Heitmann

A complex system comprises multiple interacting entities whose interdependencies form a unified whole, exhibiting emergent behaviours not present in individual components. Examples include the human brain, living cells, soft matter, Earth's…

In this paper, we present Hi-D maps, a novel method for the visualization of multi-dimensional categorical data. Our work addresses the scarcity of techniques for visualizing a large number of data-dimensions in an effective and…

Graphics · Computer Science 2025-07-11 Radi Muhammad Reza , Benjamin A Watson

Interactive segmentation enables users to segment as needed by providing cues of objects, which introduces human-computer interaction for many fields, such as image editing and medical image analysis. Typically, massive and expansive…

Computer Vision and Pattern Recognition · Computer Science 2023-03-24 Kehan Li , Yian Zhao , Zhennan Wang , Zesen Cheng , Peng Jin , Xiangyang Ji , Li Yuan , Chang Liu , Jie Chen

When studying multi-body protein complexes, biochemists use computational tools that can suggest hundreds or thousands of their possible spatial configurations. However, it is not feasible to experimentally verify more than only a very…

Human-Computer Interaction · Computer Science 2019-09-25 Katarína Furmanová , Adam Jurčík , Barbora Kozlíková , Helwig Hauser , Jan Byška

Multi-dimensional data exploration is a classic research topic in visualization. Most existing approaches are designed for identifying record patterns in dimensional space or subspace. In this paper, we propose a visual analytics approach…

Machine Learning · Computer Science 2021-04-27 Peng Xie , Wenyuan Tao , Jie Li , Wentao Huang , Siming Chen

Segmenting biologging time series of animals on multiple temporal scales is an essential step that requires complex techniques with careful parameterization and possibly cross-domain expertise. Yet, there is a lack of visual-interactive…

Human-Computer Interaction · Computer Science 2020-09-03 Philipp Meschenmoser , Juri F. Buchmüller , Daniel Seebacher , Martin Wikelski , Daniel A. Keim
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