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In neuroscience, the time elapsed since the last discharge has been used to predict the probability of the next discharge. Such predictions can be improved taking into account the last two discharge times, and possibly more. Such multi-time…

Analysis of PDEs · Mathematics 2023-04-05 Xu'An Dou , Benoît Perthame , Chenjiayue Qi , Delphine Salort , Zhennan Zhou

It has recently been realized that many theories of physics beyond the Standard Model give rise to cosmological histories exhibiting extended epochs of cosmological stasis. During such epochs, the abundances of different energy components…

Cosmology and Nongalactic Astrophysics · Physics 2024-12-17 Keith R. Dienes , Lucien Heurtier , Fei Huang , Tim M. P. Tait , Brooks Thomas

We propose a study of the Adaptive Biasing Force method's robustness under generic (possibly non-conservative) forces. We first ensure the flat histogram property is satisfied in all cases. We then introduce a fixed point problem yielding…

Analysis of PDEs · Mathematics 2021-02-22 Tony Lelièvre , Lise Maurin , Pierre Monmarché

A method is presented that, when used in conjunction with single molecule experimental techniques, allows for the extraction of rates and mechanical properties of a biomolecule undergoing transitions between mechanically distinct states.…

Biomolecules · Quantitative Biology 2009-09-29 Darren E. Segall

We consider the problem of matching two spacetimes, the previous and present aeons, in the Conformal Cyclic Cosmology model. The common boundary between them inherits two sets of constraints -- one for each solution of the Einstein field…

General Relativity and Quantum Cosmology · Physics 2023-02-28 Jarosław Kopiński , Juan A. Valiente Kroon

We consider a class of nonlocal reaction-diffusion problems, referred to as replicator-mutator equations in evolutionary genetics. By using explicit changes of unknown function, we show that they are equivalent to the heat equation and,…

Analysis of PDEs · Mathematics 2020-12-16 Matthieu Alfaro , Rémi Carles

The one-dimensional totally asymmetric simple exclusion process (TASEP) is considered. We study the time evolution property of a tagged particle in TASEP with the step-type initial condition. Calculated is the multi-time joint distribution…

Mathematical Physics · Physics 2007-08-18 T. Imamura , T. Sasamoto

Starting from a master equation in a quantum Hamiltonian form and a coupling to a heat bath we derive an evolution equation for a collective hopping process under the influence of a stochastic energy landscape. There results different…

Statistical Mechanics · Physics 2009-10-31 Michael Schulz , Steffen Trimper

Finding a good compromise between the exploitation of known resources and the exploration of unknown, but potentially more profitable choices, is a general problem, which arises in many different scientific disciplines. We propose a…

Disordered Systems and Neural Networks · Physics 2016-10-28 Thomas Gueudré , Alexander Dobrinevski , Jean-Philippe Bouchaud

We present a classical approximation for the peaks of survival resonances occurring when diffracting matter waves from absorption potentials. Generally our simplified model describes the absorption-diffraction process around the Talbot time…

Quantum Physics · Physics 2022-02-14 Mikkel F. Andersen , Sandro Wimberger

Populations are made up of an integer number of individuals and are subject to stochastic birth-death processes whose rates may vary in time. Useful quantities, like the chance of ultimate fixation, satisfy an appropriate difference…

Populations and Evolution · Quantitative Biology 2020-07-22 Jayant Pande , Nadav M. Shnerb

We are interested in reaction-diffusion systems, with a conservation law, exhibiting a Hopf bifurcation at the spatial wave number $k = 0$. With the help of a multiple scaling perturbation ansatz a Ginzburg-Landau equation coupled to a…

Analysis of PDEs · Mathematics 2024-01-24 Nicole Gauss , Anna Logioti , Guido Schneider , Dominik Zimmermann

The totally asymmetric simple exclusion process (TASEP) is a well studied example of far-from-equilibrium dynamics. Here, we consider a TASEP with open boundaries but impose a global constraint on the total number of particles. In other…

Statistical Mechanics · Physics 2008-07-02 D. A. Adams , B. Schmittmann , R. K. P. Zia

The FKPP equation with a variable growth rate and advection by an incompressible velocity field is considered as a model for plankton dispersed by ocean currents. If the average growth rate is negative then the model has a…

Populations and Evolution · Quantitative Biology 2007-09-04 Daniel A. Birch , Yue-Kin Tsang , William R. Young

The process of protein synthesis in biological systems resembles a one dimensional driven lattice gas in which the particles have spatial extent, covering more than one lattice site. We expand the well studied Totally Asymmetric Exclusion…

Statistical Mechanics · Physics 2009-11-10 Leah B. Shaw , R. K. P. Zia , Kelvin H. Lee

We present a stochastic model for the size of a taxon in paleobiology, in which we allow for the evolution of new taxon members, and both individual and catastrophic extinction events. The model uses ideas from the theory of birth and death…

Biological Physics · Physics 2007-05-23 Barry D. Hughes , William J. Reed

In this paper, we study the asymptotic behavior of solutions to the wave equation with damping depending on the space variable and growing at the spatial infinity. We prove that the solution is approximated by that of the corresponding heat…

Analysis of PDEs · Mathematics 2021-12-14 Motohiro Sobajima , Yuta Wakasugi

An extremely fast exponential expansion of the Universe is typical for the stable version of the inflationary model, based on the anomaly-induced action of gravity. The total amount of exponential $e$-folds could be very large, before the…

High Energy Physics - Theory · Physics 2021-08-05 Wagno Cesar e Silva , Ilya L. Shapiro

This paper investigates applicability of thermodynamic concepts and principles to competitive systems. We show that Tsallis entropies are suitable for characterisation of systems with transitive competition when mutations deviate from Gibbs…

Adaptation and Self-Organizing Systems · Physics 2014-03-10 A. Y. Klimenko

We consider the trapping reaction, $A+B\to B$, where $A$ and $B$ particles have a diffusive dynamics characterized by diffusion constants $D_A$ and $D_B$. The interaction with $B$ particles can be formally incorporated in an effective…

Statistical Mechanics · Physics 2009-11-10 L. Anton , R. A. Blythe , A. J. Bray