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Deep learning (DL) based unrolled reconstructions have shown state-of-the-art performance for under-sampled magnetic resonance imaging (MRI). Similar to compressed sensing, DL can leverage high-dimensional data (e.g. 3D, 2D+time, 3D+time)…

Image and Video Processing · Electrical Eng. & Systems 2021-03-09 Ke Wang , Michael Kellman , Christopher M. Sandino , Kevin Zhang , Shreyas S. Vasanawala , Jonathan I. Tamir , Stella X. Yu , Michael Lustig

Model-based deep learning (MBDL) is a powerful methodology for designing deep models to solve imaging inverse problems. MBDL networks can be seen as iterative algorithms that estimate the desired image using a physical measurement model and…

Image and Video Processing · Electrical Eng. & Systems 2025-04-04 Chicago Y. Park , Weijie Gan , Zihao Zou , Yuyang Hu , Zhixin Sun , Ulugbek S. Kamilov

Purpose: To investigate motion compensated, self-supervised, model based deep learning (MBDL) as a method to reconstruct free breathing, 3D Pulmonary ultrashort echo time (UTE) acquisitions. Theory and Methods: A self-supervised eXtra…

Medical Physics · Physics 2022-10-11 Zachary Miller , Kevin Johnson

Purpose: To evaluate the quality of deep learning reconstruction for prospectively accelerated intraoperative magnetic resonance imaging (iMRI) during resective brain tumor surgery. Materials and Methods: Accelerated iMRI was performed…

Compared with 2D MRI, 3D MRI provides superior volumetric spatial resolution and signal-to-noise ratio. However, it is more challenging to reconstruct 3D MRI images. Current methods are mainly based on convolutional neural networks (CNN)…

Image and Video Processing · Electrical Eng. & Systems 2023-06-01 Eric Z. Chen , Chi Zhang , Xiao Chen , Yikang Liu , Terrence Chen , Shanhui Sun

Purpose: To propose a wave-encoded model-based deep learning (wave-MoDL) strategy for highly accelerated 3D imaging and joint multi-contrast image reconstruction, and further extend this to enable rapid quantitative imaging using an…

Image and Video Processing · Electrical Eng. & Systems 2022-02-08 Jaejin Cho , Borjan Gagoski , Taehyung Kim , Qiyuan Tian , Stephen Robert Frost , Itthi Chatnuntawech , Berkin Bilgic

Unrolled neural networks have recently achieved state-of-the-art accelerated MRI reconstruction. These networks unroll iterative optimization algorithms by alternating between physics-based consistency and neural-network based…

Image and Video Processing · Electrical Eng. & Systems 2022-07-19 Batu Ozturkler , Arda Sahiner , Tolga Ergen , Arjun D Desai , Christopher M Sandino , Shreyas Vasanawala , John M Pauly , Morteza Mardani , Mert Pilanci

Although remarkable progress has been made on single image super-resolution due to the revival of deep convolutional neural networks, deep learning methods are confronted with the challenges of computation and memory consumption in…

Computer Vision and Pattern Recognition · Computer Science 2020-01-01 Dehua Song , Chang Xu , Xu Jia , Yiyi Chen , Chunjing Xu , Yunhe Wang

We introduce a model-based image reconstruction framework with a convolution neural network (CNN) based regularization prior. The proposed formulation provides a systematic approach for deriving deep architectures for inverse problems with…

Computer Vision and Pattern Recognition · Computer Science 2019-06-06 Hemant Kumar Aggarwal , Merry P. Mani , Mathews Jacob

Non-Cartesian sampling with subspace-constrained image reconstruction is a popular approach to dynamic MRI, but slow iterative reconstruction limits its clinical application. Data-consistent (DC) deep learning can accelerate reconstruction…

Image and Video Processing · Electrical Eng. & Systems 2022-05-05 Zihao Chen , Yuhua Chen , Yibin Xie , Debiao Li , Anthony G. Christodoulou

Acquiring fully-sampled MRI $k$-space data is time-consuming, and collecting accelerated data can reduce the acquisition time. Employing 2D Cartesian-rectilinear subsampling schemes is a conventional approach for accelerated acquisitions;…

Image and Video Processing · Electrical Eng. & Systems 2023-08-11 George Yiasemis , Clara I. Sánchez , Jan-Jakob Sonke , Jonas Teuwen

Accelerated MRI reconstruction involves solving an ill-posed inverse problem where noise in acquired data propagates to the reconstructed images. Noise analyses are central to MRI reconstruction for providing an explicit measure of solution…

Computer Vision and Pattern Recognition · Computer Science 2025-05-06 Onat Dalmaz , Arjun D. Desai , Reinhard Heckel , Tolga Çukur , Akshay S. Chaudhari , Brian A. Hargreaves

Purpose: To develop a deep-learning-based image reconstruction framework for reproducible research in MRI. Methods: The BART toolbox offers a rich set of implementations of calibration and reconstruction algorithms for parallel imaging and…

Computer Vision and Pattern Recognition · Computer Science 2024-02-20 Moritz Blumenthal , Guanxiong Luo , Martin Schilling , H. Christian M. Holme , Martin Uecker

Functional MRI (fMRI) is an important tool for non-invasive studies of brain function. Over the past decade, multi-echo fMRI methods that sample multiple echo times has become popular with potential to improve quantification. While these…

Image and Video Processing · Electrical Eng. & Systems 2023-12-12 Hongyi Gu , Chi Zhang , Zidan Yu , Christoph Rettenmeier , V. Andrew Stenger , Mehmet Akçakaya

Magnetic resonance imaging (MRI) is a non-invasive imaging modality and provides comprehensive anatomical and functional insights into the human body. However, its long acquisition times can lead to patient discomfort, motion artifacts, and…

Computer Vision and Pattern Recognition · Computer Science 2025-07-21 Mojtaba Safari , Zach Eidex , Chih-Wei Chang , Richard L. J. Qiu , Xiaofeng Yang

High spatial and temporal resolution across the whole brain is essential to accurately resolve neural activities in fMRI. Therefore, accelerated imaging techniques target improved coverage with high spatio-temporal resolution. Simultaneous…

Image and Video Processing · Electrical Eng. & Systems 2021-05-13 Omer Burak Demirel , Burhaneddin Yaman , Logan Dowdle , Steen Moeller , Luca Vizioli , Essa Yacoub , John Strupp , Cheryl A. Olman , Kâmil Uğurbil , Mehmet Akçakaya

We propose combining memory saving techniques with traditional U-Net architectures to increase the complexity of the models on the Brain Tumor Segmentation (BraTS) challenge. The BraTS challenge consists of a 3D segmentation of a…

Image and Video Processing · Electrical Eng. & Systems 2021-04-22 Mihir Pendse , Vithursan Thangarasa , Vitaliy Chiley , Ryan Holmdahl , Joel Hestness , Dennis DeCoste

Critical aspects of computational imaging systems, such as experimental design and image priors, can be optimized through deep networks formed by the unrolled iterations of classical model-based reconstructions (termed physics-based…

Computer Vision and Pattern Recognition · Computer Science 2020-03-13 Michael Kellman , Kevin Zhang , Jon Tamir , Emrah Bostan , Michael Lustig , Laura Waller

Deep Learning (DL) based Compressed Sensing (CS) has been applied for better performance of image reconstruction than traditional CS methods. However, most existing DL methods utilize the block-by-block measurement and each measurement…

Image and Video Processing · Electrical Eng. & Systems 2022-09-29 Zhifeng Wang , Zhenghui Wang , Chunyan Zeng , Yan Yu , Xiangkui Wan

While Model Based Iterative Reconstruction (MBIR) of CT scans has been shown to have better image quality than Filtered Back Projection (FBP), its use has been limited by its high computational cost. More recently, deep convolutional neural…

Image and Video Processing · Electrical Eng. & Systems 2018-12-21 Amirkoushyar Ziabari , Dong Hye Ye , Somesh Srivastava , Ken D. Sauer , Jean-Baptiste Thibault , Charles A. Bouman
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