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Knowledge Graphs (KG) and associated Knowledge Graph Embedding (KGE) models have recently begun to be explored in the context of drug discovery and have the potential to assist in key challenges such as target identification. In the drug…

Biomolecules · Quantitative Biology 2022-06-01 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Charles Tapley Hoyt , William L Hamilton

Knowledge graph (KG) reasoning is an important problem for knowledge graphs. In this paper, we propose a novel and principled framework called \textbf{RulE} (stands for {Rul}e {E}mbedding) to effectively leverage logical rules to enhance KG…

Artificial Intelligence · Computer Science 2024-05-21 Xiaojuan Tang , Song-Chun Zhu , Yitao Liang , Muhan Zhang

Knowledge graph embedding plays an important role in knowledge representation, reasoning, and data mining applications. However, for multiple cross-domain knowledge graphs, state-of-the-art embedding models cannot make full use of the data…

Machine Learning · Computer Science 2021-08-17 Hao Peng , Haoran Li , Yangqiu Song , Vincent Zheng , Jianxin Li

Knowledge graph embedding models (KGEMs) developed for link prediction learn vector representations for entities in a knowledge graph, known as embeddings. A common tacit assumption is the KGE entity similarity assumption, which states that…

Artificial Intelligence · Computer Science 2024-03-29 Nicolas Hubert , Heiko Paulheim , Armelle Brun , Davy Monticolo

Conventional Knowledge Graph Completion (KGC) assumes that all test entities appear during training. However, in real-world scenarios, Knowledge Graphs (KG) evolve fast with out-of-knowledge-graph (OOKG) entities added frequently, and we…

Computation and Language · Computer Science 2020-09-29 Damai Dai , Hua Zheng , Fuli Luo , Pengcheng Yang , Baobao Chang , Zhifang Sui

Metric learning aims to learn a highly discriminative model encouraging the embeddings of similar classes to be close in the chosen metrics and pushed apart for dissimilar ones. The common recipe is to use an encoder to extract embeddings…

Computer Vision and Pattern Recognition · Computer Science 2022-03-23 Aleksandr Ermolov , Leyla Mirvakhabova , Valentin Khrulkov , Nicu Sebe , Ivan Oseledets

Learning good image representations that are beneficial to downstream tasks is a challenging task in computer vision. As such, a wide variety of self-supervised learning approaches have been proposed. Among them, contrastive learning has…

Computer Vision and Pattern Recognition · Computer Science 2023-02-06 Yun Yue , Fangzhou Lin , Kazunori D Yamada , Ziming Zhang

Embedding knowledge graphs (KGs) into continuous vector spaces is a focus of current research. Early works performed this task via simple models developed over KG triples. Recent attempts focused on either designing more complicated triple…

Artificial Intelligence · Computer Science 2018-06-08 Boyang Ding , Quan Wang , Bin Wang , Li Guo

Knowledge graph (KG) reasoning is becoming increasingly popular in both academia and industry. Conventional KG reasoning based on symbolic logic is deterministic, with reasoning results being explainable, while modern embedding-based…

Artificial Intelligence · Computer Science 2022-02-16 Wen Zhang , Jiaoyan Chen , Juan Li , Zezhong Xu , Jeff Z. Pan , Huajun Chen

Learning representations according to the underlying geometry is of vital importance for non-Euclidean data. Studies have revealed that the hyperbolic space can effectively embed hierarchical or tree-like data. In particular, the few past…

Machine Learning · Computer Science 2023-06-16 Eric Qu , Dongmian Zou

Embedding geometry plays a fundamental role in retrieval quality, yet dense retrievers for retrieval-augmented generation (RAG) remain largely confined to Euclidean space. However, natural language exhibits hierarchical structure from broad…

Information Retrieval · Computer Science 2026-02-10 Hiren Madhu , Ngoc Bui , Ali Maatouk , Leandros Tassiulas , Smita Krishnaswamy , Menglin Yang , Sukanta Ganguly , Kiran Srinivasan , Rex Ying

Many complex systems involve interactions between more than two agents. Hypergraphs capture these higher-order interactions through hyperedges that may link more than two nodes. We consider the problem of embedding a hypergraph into…

Social and Information Networks · Computer Science 2023-01-06 Xue Gong , Desmond J. Higham , Konstantinos Zygalakis

Knowledge graph embeddings (KGE) have been extensively studied to embed large-scale relational data for many real-world applications. Existing methods have long ignored the fact many KGs contain two fundamentally different views: high-level…

Artificial Intelligence · Computer Science 2023-07-06 Zijie Huang , Daheng Wang , Binxuan Huang , Chenwei Zhang , Jingbo Shang , Yan Liang , Zhengyang Wang , Xian Li , Christos Faloutsos , Yizhou Sun , Wei Wang

Knowledge graphs represent factual knowledge about the world as relationships between concepts and are critical for intelligent decision making in enterprise applications. New knowledge is inferred from the existing facts in the knowledge…

Machine Learning · Computer Science 2022-10-04 Peru Bhardwaj

Most knowledge graph embedding (KGE) methods tailored for link prediction focus on the entities and relations in the graph, giving little attention to other literal values, which might encode important information. Therefore, some…

Machine Learning · Computer Science 2025-04-02 Antonis Klironomos , Baifan Zhou , Zhuoxun Zheng , Gad-Elrab Mohamed , Heiko Paulheim , Evgeny Kharlamov

Knowledge Graphs (KGs) often have two characteristics: heterogeneous graph structure and text-rich entity/relation information. Text-based KG embeddings can represent entities by encoding descriptions with pre-trained language models, but…

Computation and Language · Computer Science 2023-09-15 Xin Xie , Zhoubo Li , Xiaohan Wang , Zekun Xi , Ningyu Zhang

In this paper, we propose a new geometric approach for knowledge graph completion via low rank tensor approximation. We augment a pretrained and well-established Euclidean model based on a Tucker tensor decomposition with a novel hyperbolic…

Machine Learning · Computer Science 2025-04-04 Viacheslav Yusupov , Maxim Rakhuba , Evgeny Frolov

Label inventories for fine-grained entity typing have grown in size and complexity. Nonetheless, they exhibit a hierarchical structure. Hyperbolic spaces offer a mathematically appealing approach for learning hierarchical representations of…

Computation and Language · Computer Science 2020-10-06 Federico López , Michael Strube

Backward compatible representation learning enables updated models to integrate seamlessly with existing ones, avoiding to reprocess stored data. Despite recent advances, existing compatibility approaches in Euclidean space neglect the…

Machine Learning · Computer Science 2025-06-09 Ngoc Bui , Menglin Yang , Runjin Chen , Leonardo Neves , Mingxuan Ju , Rex Ying , Neil Shah , Tong Zhao

The hyperbolic space, characterized by a constant negative curvature and exponentially expanding space, aligns well with the structural properties of heterogeneous graphs. However, although heterogeneous graphs inherently possess diverse…

Machine Learning · Computer Science 2025-06-23 Jongmin Park , Seunghoon Han , Won-Yong Shin , Sungsu Lim
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