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Biological processes involve a variety of spatial and temporal scales. A holistic understanding of many biological processes therefore requires multi-scale models which capture the relevant properties on all these scales. In this manuscript…

Molecular Networks · Quantitative Biology 2015-06-23 Jan Hasenauer , Nick Jagiella , Sabrina Hross , Fabian J. Theis

We prove results on existence and uniqueness of solutions of a system of equations modeling the evolution of a generalized bioconvective flow. The mathematical model considered in the present work describes the convective motion generated…

Analysis of PDEs · Mathematics 2024-02-26 J. L. Boldrini , B. Climent-Ezquerra , M. A. Rojas-Medar , M. D. Rojas-Medar

We derive hydrodynamics of a prototypical one dimensional model, having variable-range hopping, which mimics passive diffusion and ballistic motion of active, or self-propelled, particles. The model has two main ingredients - the hardcore…

Statistical Mechanics · Physics 2020-05-27 Tanmoy Chakraborty , Subhadip Chakraborti , Arghya Das , Punyabrata Pradhan

In this paper, we consider queueing systems where the dynamics are non-stationary and state-dependent. For performance analysis of these systems, fluid and diffusion models have been typically used. Although they are proven to be…

Probability · Mathematics 2016-09-08 Young Myoung Ko , Natarajan Gautam

The transition from a microscopic model for the movement of many particles to a macroscopic continuum model for a density flow is studied. The microscopic model for the free flow is completely deterministic, described by an interaction…

Statistical Mechanics · Physics 2021-01-12 Jennifer Weissen , Simone Göttlich , Dieter Armbruster

The work reported in this paper is motivated towards the development of a mathematical model for swarm systems based on macroscopic primitives. A pattern formation and transformation model is proposed. The pattern transformation model…

Robotics · Computer Science 2013-10-10 Blesson Varghese , Gerard McKee

In this work, the artificial recirculation of water is presented and analyzed, from the perspective of the optimal control of partial differential equations, as a tool to prevent eutrophication effects in large waterbodies. A novel…

Optimization and Control · Mathematics 2020-07-23 Francisco J. Fernández , Aurea Martínez , Lino J. Alzarez-Vázquez

We introduce and analyze a model for the transport of particles or energy in extended lattice systems. The dynamics of the model acts on a discrete phase space at discrete times but has nonetheless some of the characteristic properties of…

Mathematical Physics · Physics 2015-06-12 Raphael Lefevere

We investigate the purification dynamics of a single qubit under continuous in time monitoring. By employing a collisional model framework where the system interacts sequentially with ancillary qubits, we describe the conditioned evolution…

Quantum Physics · Physics 2026-05-14 Matheus M. R. Poltronieri Martins , Henrique Santos Lima

Understanding the mechanisms of interactions within cells, tissues, and organisms is crucial to driving developments across biology and medicine. Mathematical modeling is an essential tool for simulating biological systems and revealing…

Molecular Networks · Quantitative Biology 2024-08-13 Lingxia Qiao , Ali Khalilimeybodi , Nathaniel J Linden-Santangeli , Padmini Rangamani

1. Complex systems of moving and interacting objects are ubiquitous in the natural and social sciences. Predicting their behavior often requires models that mimic these systems with sufficient accuracy, while accounting for their inherent…

Quantitative Methods · Quantitative Biology 2014-12-02 Jonathan R. Potts , Marie Auger-Méthé , Karl Mokross , Mark A. Lewis

We introduce a low Mach number model for moist atmospheric flows that accurately incorporates reversible moist processes in flows whose features of interest occur on advective rather than acoustic time scales. Total water is used as a…

Atmospheric and Oceanic Physics · Physics 2015-05-08 Max Duarte , Ann Almgren , John Bell

This paper considers a new model of individual displacement, based on fish motion, the so-called Persistent Turning Walker (PTW) model, which involves an Ornstein-Uhlenbeck process on the curvature of the particle trajectory. The goal is to…

Mathematical Physics · Physics 2014-04-08 Pierre Degond , Sébastien Motsch

The evolution equations for the generalized microscopic phase densities are introduced. The evolution equations of average values of microscopic phase densities are derived and a solution of the initial-value problem of the obtained…

Plasma Physics · Physics 2010-10-05 V. I. Gerasimenko , V. O. Shtyk , A. G. Zagorodny

In this paper we consider the multiscale modelling of water transport in vegetated soil. In the microscopic model we distinguish between subdomains of soil and plant tissue, and use the Richards equation to model the water transport through…

Analysis of PDEs · Mathematics 2024-11-05 Andrew Mair , Mariya Ptashnyk

In this article, we derive the stochastic master equations corresponding to the statistical model of a heat bath. These stochastic differential equations are obtained as continuous time limits of discrete models of quantum repeated…

Quantum Physics · Physics 2010-06-17 Ion Nechita , Clément Pellegrini

A major challenge in next-generation industrial applications is to improve numerical analysis by quantifying uncertainties in predictions. In this work we present a formulation of a fully nonlinear and dispersive potential flow water wave…

Computational Physics · Physics 2016-04-15 Daniele Bigoni , Allan P. Engsig-Karup , Claes Eskilsson

We develop a lumped parameter model to describe and predict the mass release of (absorption from) an arbitrary shaped body of any dimension in a large environment. Through the one-to-one analogy between diffusion-dominated mass transfer…

Applied Physics · Physics 2022-02-10 Pawel Rochowski , Giuseppe Pontrelli

We consider a linearized dynamical system modelling the flow rate of water along the rivers and hillslopes of an arbitrary watershed. The system is perturbed by a random rainfall in the form of a compound Poisson process. The model…

Probability · Mathematics 2018-11-05 Jorge M Ramirez , Corina Constantinescu

An approach based on a lattice version of the Boltzmann kinetic equation for describing multi-phase flows in nano- and micro-corrugated devices is proposed. We specialize it to describe the wetting/dewetting transition of fluids in presence…

Cellular Automata and Lattice Gases · Physics 2007-06-13 R. Benzi , L. Biferale , M. Sbragaglia , S. Succi , F. Toschi