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This work proposes a new algorithm for automated and simultaneous phenotyping of multiple co-occurring medical conditions, also referred as comorbidities, using clinical notes from the electronic health records (EHRs). A basic latent factor…
Nonnegative matrix factorization (NMF) is widely used for clustering with strong interpretability. Among general NMF problems, symmetric NMF is a special one that plays an important role in graph clustering where each element measures the…
Non-negative matrix factorization (NMF) is a prob- lem with many applications, ranging from facial recognition to document clustering. However, due to the variety of algorithms that solve NMF, the randomness involved in these algorithms,…
This work addresses the following question: Under what assumptions on the data generating process can one infer the causal graph from the joint distribution? The approach taken by conditional independence-based causal discovery methods is…
Traditional nonnegative matrix factorization (NMF) learns a new feature representation on the whole data space, which means treating all features equally. However, a subspace is often sufficient for accurate representation in practical…
Non-negative Matrix Factorization (NMF) is a useful method to extract features from multivariate data, but an important and sometimes neglected concern is that NMF can result in non-unique solutions. Often, there exist a Set of Feasible…
Iterative Proportional Fitting (IPF), combined with EM, is commonly used as an algorithm for likelihood maximization in undirected graphical models. In this paper, we present two iterative algorithms that generalize upon IPF. The first one…
Non-Negative Matrix Factorization (NMF) is a widely used dimension reduction method that factorizes a non-negative data matrix into two lower dimensional non-negative matrices: One is the basis or feature matrix which consists of the…
We consider polynomial maps described by so-called "(multivariate) linearized polynomials". These polynomials are defined using a fixed prime power, say q. Linearized polynomials have no mixed terms. Considering invertible polynomial maps…
Nonnegative matrix factorization (NMF) is a popular method used to reduce dimensionality in data sets whose elements are nonnegative. It does so by decomposing the data set of interest, $\mathbf{X}$, into two lower rank nonnegative matrices…
Nonnegative matrix factorization (NMF) is a linear dimensionality technique for nonnegative data with applications such as image analysis, text mining, audio source separation and hyperspectral unmixing. Given a data matrix $M$ and a…
In the non-negative matrix factorization (NMF) problem, the input is an $m\times n$ matrix $M$ with non-negative entries and the goal is to factorize it as $M\approx AW$. The $m\times k$ matrix $A$ and the $k\times n$ matrix $W$ are both…
In our previous paper an effective algorithm for inverting polynomial automorphisms was proposed. Also the class of Pascal finite polynomial automorphisms was introduced. Pascal finite polynomial maps constitute a generalization of…
Due to the undecidability of most type-related properties of System F like type inhabitation or type checking, restricted polymorphic systems have been widely investigated (the most well-known being ML-polymorphism). In this paper we…
Let $F$ be a free group of finite rank. We say that the monomorphism problem in $F$ is decidable if for any two elements $u$ and $v$ in $F$, there is an algorithm that determines whether there exists a monomorphism of $F$ that sends $u$ to…
Given a family $\mathcal{F}$ of graphs, a graph is \emph{$\mathcal{F}$-subgraph-free} if it has no subgraph isomorphic to a member of $\mathcal{F}$. We present a fixed-parameter linear-time algorithm that decides whether a planar graph can…
We provide an effective algorithm for determining whether an element of the outer automorphism group of a free group is fully irreducible. Our method produces a finite list which can be checked for periodic proper free factors.
Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of high-dimensional data as it automatically extracts sparse and meaningful features from a set of nonnegative data vectors. We first illustrate this…
We give a new fpt algorithm testing isomorphism of $n$-vertex graphs of tree width $k$ in time $2^{k\operatorname{polylog} (k)}\operatorname{poly} (n)$, improving the fpt algorithm due to Lokshtanov, Pilipczuk, Pilipczuk, and Saurabh (FOCS…
The criteria for determining graph isomorphism are crucial for solving graph isomorphism problems. The necessary condition is that two isomorphic graphs possess invariants, but their function can only be used to filtrate and subdivide…