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Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…

Computation and Language · Computer Science 2022-07-20 Ling Luo , Po-Ting Lai , Chih-Hsuan Wei , Cecilia N Arighi , Zhiyong Lu

Prompt-tuning has become an increasingly popular parameter-efficient method for adapting large pretrained language models to downstream tasks. However, both discrete prompting and continuous prompting assume fixed prompts for all data…

Computation and Language · Computer Science 2023-07-12 Runcheng Liu , Ahmad Rashid , Ivan Kobyzev , Mehdi Rezagholizadeh , Pascal Poupart

Knowledge base construction is crucial for summarising, understanding and inferring relationships between biomedical entities. However, for many practical applications such as drug discovery, the scarcity of relevant facts (e.g. gene X is…

Computation and Language · Computer Science 2019-07-04 Julien Fauqueur , Ashok Thillaisundaram , Theodosia Togia

Prompt-tuning is an emerging strategy to adapt large language models (LLM) to downstream tasks by learning a (soft-)prompt parameter from data. Despite its success in LLMs, there is limited theoretical understanding of the power of…

Machine Learning · Computer Science 2023-06-07 Samet Oymak , Ankit Singh Rawat , Mahdi Soltanolkotabi , Christos Thrampoulidis

Prompt engineering is crucial for harnessing the potential of large language models (LLMs), especially in the medical domain where specialized terminology and phrasing is used. However, the efficacy of prompt engineering in the medical…

Computation and Language · Computer Science 2025-07-22 Jamil Zaghir , Marco Naguib , Mina Bjelogrlic , Aurélie Névéol , Xavier Tannier , Christian Lovis

Relation extraction is used to populate knowledge bases that are important to many applications. Prior datasets used to train relation extraction models either suffer from noisy labels due to distant supervision, are limited to certain…

Computation and Language · Computer Science 2021-02-22 Robert Ormandi , Mohammad Saleh , Erin Winter , Vinay Rao

This paper presents a study on the integration of domain-specific knowledge in prompt engineering to enhance the performance of large language models (LLMs) in scientific domains. A benchmark dataset is curated to encapsulate the intricate…

Computation and Language · Computer Science 2024-04-24 Hongxuan Liu , Haoyu Yin , Zhiyao Luo , Xiaonan Wang

Large Language Models (LLMs) are increasingly deployed in medical settings, yet their sensitivity to prompt formatting remains poorly characterized. We evaluate MedGemma (4B and 27B parameters) on MedMCQA (4,183 questions) and PubMedQA…

Computation and Language · Computer Science 2026-03-30 Binesh Sadanandan , Vahid Behzadan

Recently, pretrained language models (PLMs) have had exceptional success in language generation. To leverage the rich knowledge encoded by PLMs, a simple yet powerful paradigm is to use prompts in the form of either discrete tokens or…

Computation and Language · Computer Science 2022-10-04 Tianyi Tang , Junyi Li , Wayne Xin Zhao , Ji-Rong Wen

Prompting methods have shown impressive performance in a variety of text mining tasks and applications, especially few-shot ones. Despite the promising prospects, the performance of prompting model largely depends on the design of prompt…

Computation and Language · Computer Science 2023-06-16 Hongyuan Dong , Weinan Zhang , Wanxiang Che

Automatic evaluation of large language model (LLM) responses requires not only factual correctness but also clarity, particularly in political question-answering. While recent datasets provide human annotations for clarity and evasion, the…

Computation and Language · Computer Science 2026-01-14 Lavanya Prahallad , Sai Utkarsh Choudarypally , Pragna Prahallad , Pranathi Prahallad

Generative relation extraction (RE) commonly involves first reformulating RE as a linguistic modeling problem easily tackled with pre-trained language models (PLM) and then fine-tuning a PLM with supervised cross-entropy loss. Although…

Computation and Language · Computer Science 2025-01-07 Jiaxin Duan , Fengyu Lu , Junfei Liu

With the advent of large language models (LLMs), the vast unstructured text within millions of academic papers is increasingly accessible for materials discovery, although significant challenges remain. While LLMs offer promising few- and…

Computation and Language · Computer Science 2025-09-30 Amit K Verma , Zhisong Zhang , Junwon Seo , Robin Kuo , Runbo Jiang , Emma Strubell , Anthony D Rollett

Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…

Computation and Language · Computer Science 2020-04-15 Hong Guan , Jianfu Li , Hua Xu , Murthy Devarakonda

Large language models (LLMs) have become increasingly capable of following instructions and complex reasoning, making prompting a flexible interface for adapting models without parameter updates. Yet prompt design remains labor-intensive…

Computation and Language · Computer Science 2026-05-22 Farima Fatahi Bayat , Moin Aminnaseri , Pouya Pezeshkpour , Estevam Hruschka

Relation extraction is a critical task in the field of natural language processing with numerous real-world applications. Existing research primarily focuses on monolingual relation extraction or cross-lingual enhancement for relation…

Artificial Intelligence · Computer Science 2024-03-26 Lingxing Kong , Yougang Chu , Zheng Ma , Jianbing Zhang , Liang He , Jiajun Chen

Recent prompt-based approaches allow pretrained language models to achieve strong performances on few-shot finetuning by reformulating downstream tasks as a language modeling problem. In this work, we demonstrate that, despite its…

Computation and Language · Computer Science 2021-09-10 Prasetya Ajie Utama , Nafise Sadat Moosavi , Victor Sanh , Iryna Gurevych

Prompt recovery, a crucial task in natural language processing, entails the reconstruction of prompts or instructions that language models use to convert input text into a specific output. Although pivotal, the design and effectiveness of…

Computation and Language · Computer Science 2024-07-09 Jianlong Chen , Wei Xu , Zhicheng Ding , Jinxin Xu , Hao Yan , Xinyu Zhang

In recent years, Large Language Models have garnered significant attention for their strong performance in various natural language tasks, such as machine translation and question answering. These models demonstrate an impressive ability to…

Computation and Language · Computer Science 2025-02-21 Qibang Liu , Wenzhe Wang , Jeffrey Willard

Biomedical event extraction is an information extraction task to obtain events from biomedical text, whose targets include the type, the trigger, and the respective arguments involved in an event. Traditional biomedical event extraction…

Computation and Language · Computer Science 2024-03-20 Pengchao Wu , Xuefeng Li , Jinghang Gu , Longhua Qian , Guodong Zhou