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The message-passing mechanism underlying Graph Neural Networks (GNNs) is not naturally suited for heterophilic datasets, where adjacent nodes often have different labels. Most solutions to this problem remain confined to the task of node…

Machine Learning · Computer Science 2025-06-30 Andrea Giuseppe Di Francesco , Francesco Caso , Maria Sofia Bucarelli , Fabrizio Silvestri

Link prediction is a crucial problem in graph-structured data. Due to the recent success of graph neural networks (GNNs), a variety of GNN-based models were proposed to tackle the link prediction task. Specifically, GNNs leverage the…

Machine Learning · Computer Science 2022-12-06 Kaiwen Dong , Yijun Tian , Zhichun Guo , Yang Yang , Nitesh V. Chawla

While links in simple networks describe pairwise interactions between nodes, it is necessary to incorporate hypernetworks for modeling complex systems with arbitrary-sized interactions. In this study, we focus on the hyperlink prediction…

Social and Information Networks · Computer Science 2021-11-17 Liming Pan , Hui-Juan Shang , Peiyan Li , Haixing Dai , Wei Wang , Lixin Tian

Relational data are ubiquitous in real-world data applications, e.g., in social network analysis or biological modeling, but networks are nearly always incompletely observed. The state-of-the-art for predicting missing links in the hard…

Machine Learning · Computer Science 2025-08-13 Bisman Singh , Lucy Van Kleunen , Aaron Clauset

Link prediction is one of the fundamental problems in network analysis. In many applications, notably in genetics, a partially observed network may not contain any negative examples of absent edges, which creates a difficulty for many…

Machine Learning · Statistics 2013-01-30 Yunpeng Zhao , Elizaveta Levina , Ji Zhu

The link prediction task on knowledge graphs without explicit negative triples in the training data motivates the usage of rank-based metrics. Here, we review existing rank-based metrics and propose desiderata for improved metrics to…

Machine Learning · Computer Science 2022-04-20 Charles Tapley Hoyt , Max Berrendorf , Mikhail Galkin , Volker Tresp , Benjamin M. Gyori

The topological (or graph) structures of real-world networks are known to be predictive of multiple dynamic properties of the networks. Conventionally, a graph structure is represented using an adjacency matrix or a set of hand-crafted…

Social and Information Networks · Computer Science 2016-10-21 Cheng Li , Xiaoxiao Guo , Qiaozhu Mei

Link prediction is a key problem for network-structured data. Link prediction heuristics use some score functions, such as common neighbors and Katz index, to measure the likelihood of links. They have obtained wide practical uses due to…

Machine Learning · Computer Science 2018-11-21 Muhan Zhang , Yixin Chen

Link prediction is a paradigmatic problem in network science, which aims at estimating the existence likelihoods of nonobserved links, based on known topology. After a brief introduction of the standard problem and metrics of link…

Data Analysis, Statistics and Probability · Physics 2021-12-14 Tao Zhou

Some networked systems can be better modelled by multilayer structure where the individual nodes develop relationships in multiple layers. Multilayer networks with similar nodes across layers are also known as multiplex networks. This…

Social and Information Networks · Computer Science 2020-01-08 Shaghayegh Najari , Mostafa Salehi , Vahid Ranjbar , Mahdi Jalili

Tie strength prediction, sometimes named weight prediction, is vital in exploring the diversity of connectivity pattern emerged in networks. Due to the fundamental significance, it has drawn much attention in the field of network analysis…

Social and Information Networks · Computer Science 2020-01-16 Zhen Liu , Hu li , Chao Wang

Link prediction, a fundamental task on graphs, has proven indispensable in various applications, e.g., friend recommendation, protein analysis, and drug interaction prediction. However, since datasets span a multitude of domains, they could…

Social and Information Networks · Computer Science 2024-11-11 Haitao Mao , Juanhui Li , Harry Shomer , Bingheng Li , Wenqi Fan , Yao Ma , Tong Zhao , Neil Shah , Jiliang Tang

The problem of link prediction, predicting if two nodes in a network have a connection between them, is a theoretical problem with numerous field-agnostic real-world applications. This paper investigates the efficacy of three classes of…

Social and Information Networks · Computer Science 2023-06-23 Vivian Feng

Many complex networks display a mesoscopic structure with groups of nodes sharing many links with the other nodes in their group and comparatively few with nodes of different groups. This feature is known as community structure and encodes…

Physics and Society · Physics 2009-07-31 Andrea Lancichinetti , Santo Fortunato

Link prediction, or the inference of future or missing connections between entities, is a well-studied problem in network analysis. A multitude of heuristics exist for link prediction in ordinary networks with a single type of connection.…

Machine Learning · Computer Science 2020-04-10 Robert E. Tillman , Vamsi K. Potluru , Jiahao Chen , Prashant Reddy , Manuela Veloso

Link prediction is a fundamental problem for graph-structured data (e.g., social networks, drug side-effect networks, etc.). Graph neural networks have offered robust solutions for this problem, specifically by learning the representation…

Machine Learning · Computer Science 2022-06-27 Paul Louis , Shweta Ann Jacob , Amirali Salehi-Abari

Network analysis has played a key role in knowledge discovery and data mining. In many real-world applications in recent years, we are interested in mining multilayer networks, where we have a number of edge sets called layers, which encode…

Social and Information Networks · Computer Science 2022-11-08 Yasushi Kawase , Atsushi Miyauchi , Hanna Sumita

Link prediction is a fundamental problem in graph data. In its most realistic setting, the problem consists of predicting missing or future links between random pairs of nodes from the set of disconnected pairs. Graph Neural Networks (GNNs)…

Machine Learning · Computer Science 2024-12-03 João Mattos , Zexi Huang , Mert Kosan , Ambuj Singh , Arlei Silva

Predicting links in sparse, continuously evolving networks is a central challenge in network science. Conventional heuristic methods and deep learning models, including Graph Neural Networks (GNNs), are typically designed for static graphs…

Social and Information Networks · Computer Science 2026-02-17 Nafiseh Sadat Sajadi , Behnam Bahrak , Mahdi Jafari Siavoshani

Link prediction, or predicting the likelihood of a link in a knowledge graph based on its existing state is a key research task. It differs from a traditional link prediction task in that the links in a knowledge graph are categorized into…