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We develop a theory characterizing the fundamental capability of deep neural networks to learn, from evolution traces, the logical rules governing the behavior of cellular automata (CA). This is accomplished by first establishing a novel…

Artificial Intelligence · Computer Science 2024-04-09 Yani Zhang , Helmut Bölcskei

Development combines three basic processes asymmetric --- cell division, signaling and gene regulation --- in a multitude of ways to create an overwhelming diversity of multicellular life-forms. Here, we attempt to chart this diversity…

Molecular Networks · Quantitative Biology 2020-01-01 Somya Mani , Tsvi Tlusty

The field of Continual Learning (CL) seeks to develop algorithms that accumulate knowledge and skills over time through interaction with non-stationary environments. In practice, a plethora of evaluation procedures (settings) and…

The year of 2024 marks the 25th anniversary of the publication of evoloops, an evolutionary variant of Chris Langton's self-reproducing loops which proved constructively that Darwinian evolution of self-reproducing organisms by variation…

Cellular Automata and Lattice Gases · Physics 2024-12-11 Hiroki Sayama , Chrystopher L. Nehaniv

This paper deals with the theory and application of 2-Dimensional, nine-neighborhood, null- boundary, uniform as well as hybrid Cellular Automata (2D CA) linear rules in image processing. These rules are classified into nine groups…

Discrete Mathematics · Computer Science 2008-04-16 Pabitra Pal Choudhury , Birendra Kumar Nayak , Sudhakar Sahoo , Sunil Pankaj Rath

To test generalization ability of a class of deep neural networks, we randomly generate a large number of different rule sets for 2-D cellular automata (CA), based on John Conway's Game of Life. Using these rules, we compute several…

Machine Learning · Computer Science 2021-11-22 Marcel Aach , Jens Henrik Goebbert , Jenia Jitsev

Discovering diverse visual patterns in continuous cellular automata (CA) is challenging due to the vastness and redundancy of high-dimensional behavioral spaces. Traditional exploration methods like Novelty Search (NS) expand locally by…

Artificial Intelligence · Computer Science 2025-09-05 Sina Khajehabdollahi , Gautier Hamon , Marko Cvjetko , Pierre-Yves Oudeyer , Clément Moulin-Frier , Cédric Colas

In generalized regression models the effect of continuous covariates is commonly assumed to be linear. This assumption, however, may be too restrictive in applications and may lead to biased effect estimates and decreased predictive…

Methodology · Statistics 2023-11-01 Nikolai Spuck , Matthias Schmid , Moritz Berger

We review an algorithm developed for parameter estimation within the Continuous Data Assimilation (CDA) approach. We present an alternative derivation for the algorithm presented in a paper by Carlson, Hudson, and Larios (CHL, 2021). This…

Numerical Analysis · Mathematics 2024-11-22 Joshua Newey , Jared P Whitehead , Elizabeth Carlson

Lineage tracing, the determination and mapping of progeny arising from single cells, is an important approach enabling the elucidation of mechanisms underlying diverse biological processes ranging from development to disease. We developed a…

In online continual learning (CL), models trained on changing distributions easily forget previously learned knowledge and bias toward newly received tasks. To address this issue, we present Continual Bias Adaptor (CBA), a bi-level…

Machine Learning · Computer Science 2024-08-27 Quanziang Wang , Renzhen Wang , Yichen Wu , Xixi Jia , Minghao Zhou , Deyu Meng

We present mathematical techniques for exhaustive studies of long-term dynamics of asynchronous biological system models. Specifically, we extend the notion of $\kappa$-equivalence developed for graph dynamical systems to support systematic…

Discrete Mathematics · Computer Science 2022-08-26 Henning S. Mortveit , Ryan Pederson

In this paper we propose an approach for measuring growth of complexity of emerging patterns in complex systems such as cellular automata. We discuss several ways how a metric for measuring the complexity growth can be defined. This…

Cellular Automata and Lattice Gases · Physics 2022-07-22 Hugo Cisneros , Josef Sivic , Tomas Mikolov

In this paper we use the cellular automaton (CA) approach to model one-dimensional binary diffusion in solids. Employing a very simple state change rule we define an asynchronous CA model and take its continuum limit to obtain the governing…

Computational Physics · Physics 2019-11-20 Helena Ribera , Brian Wetton , Timothy Myers

The emergent dynamics in spacetime diagrams of cellular automata (CAs) is often organised by means of a number of behavioural classes. Whilst classification of elementary CAs is feasible and well-studied, non-elementary CAs are generally…

Cellular Automata and Lattice Gases · Physics 2025-07-10 Michiel Rollier , Aisling J. Daly , Jan M. Baetens

Evolutionary algorithms (EAs) have emerged as a powerful framework for optimization, especially for black-box optimization. Existing evolutionary algorithms struggle to comprehend and effectively utilize task-specific information for…

Neural and Evolutionary Computing · Computer Science 2024-12-24 Kai Wu , Xiaobin Li , Penghui Liu , Jing Liu

Building self-adaptive and self-organizing (SASO) systems is a challenging problem, in part because SASO principles are not yet well understood and few platforms exist for exploring them. Cellular automata (CA) are a well-studied approach…

Neural and Evolutionary Computing · Computer Science 2014-05-20 David B. Knoester , Heather J. Goldsby , Christoph Adami

We consider a simple setting in neuroevolution where an evolutionary algorithm optimizes the weights and activation functions of a simple artificial neural network. We then define simple example functions to be learned by the network and…

Neural and Evolutionary Computing · Computer Science 2023-10-17 Paul Fischer , Emil Lundt Larsen , Carsten Witt

A transition from asymmetric to symmetric patterns in time-dependent extended systems is described. It is found that one dimensional cellular automata, started from fully random initial conditions, can be forced to evolve into complex…

Cellular Automata and Lattice Gases · Physics 2007-05-23 J. R. Sanchez , R. Lopez-Ruiz

We propose and discuss two variants of kinetic particle models - cellular automata in 1+1 dimensions, which have some appeal due to their simplicity and intriguing properties which could warrant further research and applications. The first…

Statistical Mechanics · Physics 2023-05-17 Tomaz Prosen
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