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The Mapper algorithm is an essential tool for visualizing complex, high dimensional data in topology data analysis (TDA) and has been widely used in biomedical research. It outputs a combinatorial graph whose structure implies the shape of…

Machine Learning · Computer Science 2025-04-24 Yuyang Tao , Shufei Ge

In traditional topology optimization, the computing time required to iteratively update the material distribution within a design domain strongly depends on the complexity or size of the problem, limiting its application in real engineering…

Computational Engineering, Finance, and Science · Computer Science 2024-05-14 Gabriel Garayalde , Matteo Torzoni , Matteo Bruggi , Alberto Corigliano

We present new methods of automating the construction of index pairs, essential ingredients of discrete Conley index theory. These new algorithms are further steps in the direction of automating computer-assisted proofs of semi-conjugacies…

Dynamical Systems · Mathematics 2023-05-26 Rafael M. Frongillo , Rodrigo Treviño

The paper presents a new method for shape and topology optimization based on an efficient and scalable boundary integral formulation for elasticity. To optimize topology, our approach uses iterative extraction of isosurfaces of a…

Optimization and Control · Mathematics 2016-12-14 Igor Ostanin , Ivan Tsybulin , Mikhail Litsarev , Ivan Oseledets , Denis Zorin

We discuss algorithms for estimating the Shannon entropy h of finite symbol sequences with long range correlations. In particular, we consider algorithms which estimate h from the code lengths produced by some compression algorithm. Our…

Statistical Mechanics · Physics 2017-04-24 Thomas Schürmann , Peter Grassberger

We present a homotopic approach to solving challenging, optimization-based motion planning problems. The approach uses Homotopy Optimization, which, unlike standard continuation methods for solving homotopy problems, solves a sequence of…

Robotics · Computer Science 2024-08-23 Shayan Pardis , Matthew Chignoli , Sangbae Kim

Characterizing the entropy of a system is a crucial, and often computationally costly, step in understanding its thermodynamics. It plays a key role in the study of phase transitions, pattern formation, protein folding and more. Current…

Statistical Mechanics · Physics 2020-12-02 Amit Nir , Eran Sela , Roy Beck , Yohai Bar-Sinai

The relaxed maximum entropy problem is concerned with finding a probability distribution on a finite set that minimizes the relative entropy to a given prior distribution, while satisfying relaxed max-norm constraints with respect to a…

Machine Learning · Computer Science 2013-11-08 Moshe Dubiner , Matan Gavish , Yoram Singer

Let $f$ be a $C^r$ ($r>1$) diffeomorphism on a compact surface $M$ with $h_{\rm top}(f)\geq\frac{\lambda^{+}(f)}{r}$ where $\lambda^{+}(f):=\lim_{n\to+\infty}\frac{1}{n}\max_{x\in M}\log \left\|Df^{n}_{x}\right\|$. We establish an…

Dynamical Systems · Mathematics 2026-04-16 Yuntao Zang

Planning for multi-robot teams in complex environments is a challenging problem, especially when these teams must coordinate to accomplish a common objective. In general, optimal solutions to these planning problems are computationally…

Robotics · Computer Science 2024-03-07 Cora A. Dimmig , Kevin C. Wolfe , Joseph Moore

Carbon nanotube Y-junctions are of great interest to the next generation of innovative multi-terminal nanodevices. Topological indices are graph-theoretically based parameters that describe various structural properties of a chemical…

Mesoscale and Nanoscale Physics · Physics 2023-01-06 Sohan Lal , Vijay Kumar Bhat , Sahil Sharma

The purpose of this paper is to present a weighted kneading theory for unidimensional maps with holes. We consider extensions of the kneading theory of Milnor and Thurston to expanding discontinuous maps with holes and introduce weights in…

Dynamical Systems · Mathematics 2007-05-23 J. Leonel Rocha , J. Sousa Ramos

Hypergraph is a topological model for networks. In order to study the topology of hypergraphs, the homology of the associated simplicial complexes and the embedded homology have been invented. In this paper, we give some algorithms to…

Algebraic Topology · Mathematics 2018-01-03 Shiquan Ren , Chengyuan Wu , Stephane Bressan , Jie Wu

We study the problem of identifying the causal relationship between two discrete random variables from observational data. We recently proposed a novel framework called entropic causality that works in a very general functional model but…

Information Theory · Computer Science 2017-01-31 Murat Kocaoglu , Alexandros G. Dimakis , Sriram Vishwanath , Babak Hassibi

We study entropy-bounded computational geometry, that is, geometric algorithms whose running times depend on a given measure of the input entropy. Specifically, we introduce a measure that we call range-partition entropy, which unifies and…

Computational Geometry · Computer Science 2025-08-29 David Eppstein , Michael T. Goodrich , Abraham M. Illickan , Claire A. To

The multiway-cut problem is, given a weighted graph and k >= 2 terminal nodes, to find a minimum-weight set of edges whose removal separates all the terminals. The problem is NP-hard, and even NP-hard to approximate within 1+delta for some…

Data Structures and Algorithms · Computer Science 2015-06-02 David Karger , Phil Klein , Cliff Stein , Mikkel Thorup , Neal E. Young

We investigate the flexibility of the entropy (topological and metric) for the class of piecewise expanding unimodal maps. We show that the only restrictions for the values of the topological and metric entropies in this class are that both…

Dynamical Systems · Mathematics 2020-04-07 Lluís Alsedà , Michał Misiurewicz , Rodrigo A. Pérez

We introduce the topological complexity of the work map associated to a robot system. In broad terms, this measures the complexity of any algorithm controlling, not just the motion of the configuration space of the given system, but the…

Algebraic Topology · Mathematics 2019-01-30 Aniceto Murillo , Jie Wu

We introduce a novel extrapolation algorithm inspired by quantum mechanics and evaluate its performance against linear prediction. Our method involves mapping function values onto a quantum state and estimating future function values by…

Quantum Physics · Physics 2023-10-13 Lambert Lin , Steven R White

A fast method is presented for computing the topological entropy of braids on the torus. This work is motivated by the need to analyze large braids when studying two-dimensional flows via the braiding of a large number of particle…

Chaotic Dynamics · Physics 2007-12-12 Matthew D. Finn , Jean-Luc Thiffeault