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Recent studies have shown that the majority of published computational models in systems biology and physiology are not repeatable or reproducible. There are a variety of reasons for this. One of the most likely reasons is that given how…
The iterative character of work in machine learning (ML) and artificial intelligence (AI) and reliance on comparisons against benchmark datasets emphasize the importance of reproducibility in that literature. Yet, resource constraints and…
The growing importance of citation-based bibliometric indicators in shaping the prospects of academic careers incentivizes scientists to boost the numbers of citations they receive. Whereas the exploitation of self-citations has been…
Articles in high-impact journals are, on average, more frequently cited. But are they cited more often because those articles are somehow more "citable"? Or are they cited more often simply because they are published in a high-impact…
In recent years, the relationship of collaboration among scientists and the citation impact of papers have been frequently investigated. Most of the studies show that the two variables are closely related: an increasing collaboration…
Is more always better? We address this question in the context of bibliometric indices that aim to assess the scientific impact of individual researchers by counting their number of highly cited publications. We propose a simple model in…
Reproducibility is an important feature of science; experiments are retested, and analyses are repeated. Trust in the findings increases when consistent results are achieved. Despite the importance of reproducibility, significant work is…
The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around…
Citations in the scientific literature system do not simply reflect relationships between knowledge but are influenced by non-objective and societal factors. Citation bias, irresponsible citation, and citation manipulation are widespread…
Science is a cumulative activity, which can manifest itself through the act of citing. Citations are also central to research evaluation, thus creating incentives for researchers to cite their own work. Using a dataset containing more than…
Citations are a key indicator of research impact but are shaped by factors beyond intrinsic research quality, including prestige, social networks, and thematic similarity. While the Matthew Effect explains how prestige accumulates and…
Scientific journals are an important choice of publication venue for most authors. Publishing in prestigious journal plays a decisive role for authors in hiring and promotions. In last decade, citation pressure has become intact for all…
For decades the number of scientific publications has been rapidly increasing, effectively out-dating knowledge at a tremendous rate. Only few scientific milestones remain relevant and continuously attract citations. Here we quantify how…
Reputation is an important social construct in science, which enables informed quality assessments of both publications and careers of scientists in the absence of complete systemic information. However, the relation between reputation and…
Researchers are often evaluated by citation-based metrics. Such metrics can inform hiring, promotion, and funding decisions. Concerns have been expressed that popular citation-based metrics incentivize researchers to maximize the production…
Although reproducibility is a core tenet of the scientific method, it remains challenging to reproduce many results. Surprisingly, this also holds true for computational results in domains such as systems biology where there have been…
Citation recommendation is an important task to assist scholars in finding candidate literature to cite. Traditional studies focus on static models of recommending citations, which do not explicitly distinguish differences between papers…
Citations in science are being studied from several perspectives, among which approaches such as scientometrics and science of science. In this chapter I briefly review some of the literature on citations, citation distributions and models…
Citation recommendation systems have attracted much academic interest, resulting in many studies and implementations. These systems help authors automatically generate proper citations by suggesting relevant references based on the text…
Citations play an important role in researchers' careers as a key factor in evaluation of scientific impact. Many anecdotes advice authors to exploit this fact and cite prospective reviewers to try obtaining a more positive evaluation for…