Related papers: Repeatable patterns and the maximum multiplicity o…
We introduce a variant of de Bruijn words that we call perfect necklaces. Fix a finite alphabet. Recall that a word is a finite sequence of symbols in the alphabet and a circular word, or necklace, is the equivalence class of a word under…
The Langberg-M\'edard multiple unicast conjecture claims that for any strongly reachable $k$-pair network, there exists a multi-flow with rate $(1,1,\dots,1)$. In a previous work, through combining and concatenating the so-called elementary…
This paper provides an upper bound for several subsets of maximal repeats and maximal pairs in compressed strings and also presents a formerly unknown relationship between maximal pairs and the run-length Burrows-Wheeler transform. This…
In this paper, we find an explicit formulas, or recurrences, in terms of generating functions for the cardinalities of the sets $S_n(T;\tau)$ of all permutations in $S_n$ that contain $\tau\in S_k$ exactly once and avoid a subset…
The relaxed maximum entropy problem is concerned with finding a probability distribution on a finite set that minimizes the relative entropy to a given prior distribution, while satisfying relaxed max-norm constraints with respect to a…
Given a graph $G=(V,E)$ with non-negative real edge lengths and an integer parameter $k$, the Min-Max k-Tree Cover problem seeks to find a set of at most $k$ subtrees of $G$, such that the union of the trees is the vertex set $V$. The…
The main theme of this paper is the enumeration of the occurrence of a pattern in words and permutations. We mainly focus on asymptotic properties of the sequence $f_r^v(k,n),$ the number of $n$-array $k$-ary words that contain a given…
We describe the first self-indexes able to count and locate pattern occurrences in optimal time within a space bounded by the size of the most popular dictionary compressors. To achieve this result we combine several recent findings,…
In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…
Minimizers are sampling schemes with numerous applications in computational biology. Assuming a fixed alphabet of size $\sigma$, a minimizer is defined by two integers $k,w\ge2$ and a linear order $\rho$ on strings of length $k$ (also…
We prove a density version of the Carlson--Simpson Theorem. Specifically we show the following. For every integer $k\geq 2$ and every set $A$ of words over $k$ satisfying \[\limsup_{n\to\infty} \frac{|A\cap [k]^n|}{k^n}>0\] there exist a…
The problem of non-monotone $k$-submodular maximization under a knapsack constraint ($\kSMK$) over the ground set size $n$ has been raised in many applications in machine learning, such as data summarization, information propagation, etc.…
We study the formula complexity of the word problem $\mathsf{Word}_{S_n,k} : \{0,1\}^{kn^2} \to \{0,1\}$: given $n$-by-$n$ permutation matrices $M_1,\dots,M_k$, compute the $(1,1)$-entry of the matrix product $M_1\cdots M_k$. An important…
In this note we show that if $(u_n)_{n\geqslant 1}$ is a simple linearly recurrent sequence of integers whose minimal recurrence of order $k$ involves only positive coefficients that has positive initial terms, then $(Mu_{n^s})_{n\geqslant…
We study the impartial game PAP (``permutations avoiding patterns''), in which players take turns choosing patterns to avoid. We define a set of length $k$ patterns, $B_k$, and show that it is the unique minimal monotone-forcing subset of…
The {\em shortest common superstring} and the {\em shortest common supersequence} are two well studied problems having a wide range of applications. In this paper we consider both problems with resource constraints, denoted as the…
In this work we obtain recurrent formulae for the number of permutations with either increasing or monotonic (i.e., both increasing and decreasing) runs of bounded length. Our formulae allow one to efficiently compute the number of such…
In this paper, we revisit the problem of finding the longest systematic-length $k$ for a linear minimum storage regenerating (MSR) code with optimal repair of only systematic part, for a given per-node storage capacity $l$ and an arbitrary…
Using the concept of discrete noiseless channels, it was shown by Shannon in A Mathematical Theory of Communication that the ultimate performance of an encoder for a constrained system is limited by the combinatorial capacity of the system…
Given positive integers $n$ and $m$, let $p_n(m)$ be the probability that a uniform random permutation of $[n]$ has order exactly $m$. We show that, as $n \to \infty$, the maximum of $p_n(m)$ over all $m$ is asymptotic to $1/n$, the…