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Real-world systems are characterized by complex interactions of their internal degrees of freedom, while living in ever-changing environments whose net effect is to act as additional couplings. Here, we introduce a paradigmatic interacting…

Statistical Mechanics · Physics 2021-11-23 Giorgio Nicoletti , Daniel Maria Busiello

Stochastic forces in natural systems are rarely isotropic. From hydrodynamically coupled colloids to chemical reaction networks, noise contributions are inherently correlated. Together with internal interactions and changing environments,…

Statistical Mechanics · Physics 2026-05-14 Andrea Marchetti , Daniel Maria Busiello , Giorgio Nicoletti

The exchange of information between an open quantum system and its environment allows us to discriminate among different kinds of dynamics, in particular detecting memory effects to characterize non-Markovianity. Here, we investigate the…

Quantum Physics · Physics 2021-04-28 Andrea Smirne , Nina Megier , Bassano Vacchini

Exchange of information between a quantum system and its surrounding environment plays a fundamental role in the study of the dynamics of open quantum systems. Here we discuss the role of the information exchange in the non-Markovian…

Real-world systems are shaped by both their complex internal interactions and the changes in their noisy environments. In this work, we study how a shared active bath affects the statistical dependencies between two interacting Brownian…

Statistical Mechanics · Physics 2024-10-10 Giorgio Nicoletti , Daniel M. Busiello

This Thesis explores how tools from Statistical Physics and Information Theory can help us describe and understand complex systems. In the first part, we study the interplay between internal interactions, environmental changes, and…

Statistical Mechanics · Physics 2023-03-01 Giorgio Nicoletti

Exchange of biochemical substances is essential way in establishing communication between bacterial cells. It is noticeable that all phases of the process are heavily influenced by perturbations of either internal or external parameters.…

Chaotic Dynamics · Physics 2010-08-18 Igor Balaz , Dragutin T. Mihailovic

Cells must continuously sense and respond to time-varying environmental stimuli. These signals are transmitted and processed by biochemical signalling networks. However, the biochemical reactions making up these networks are intrinsically…

Molecular Networks · Quantitative Biology 2015-05-18 Filipe Tostevin , Pieter Rein ten Wolde

This thesis uses a quantity that is defined and justified by information theory -- mutual information -- to examine models of condensed matter systems. More precisely, it studies models which are made up out of ferromagnetically interacting…

Quantum Physics · Physics 2013-03-19 Johannes Wilms

We consider the concept of mutual information in ecological networks, and use this idea to analyse the Tangled Nature model of co-evolution. We show that this measure of correlation has two distinct behaviours depending on how we define the…

Populations and Evolution · Quantitative Biology 2009-11-02 Dominic Jones , Henrik Jeldtoft Jensen , Paolo Sibani

The interactions between three or more random variables are often nontrivial, poorly understood, and yet, are paramount for future advances in fields such as network information theory, neuroscience, genetics and many others. In this work,…

Information Theory · Computer Science 2016-04-20 Fernando Rosas , Vasilis Ntranos , Christopher J. Ellison , Sofie Pollin , Marian Verhelst

Cells sense environmental signals and transmit information intracellularly through changes in the abundance of molecular components. Such molecular abundances can be measured in single cells and exhibit significant heterogeneity in clonal…

Quantitative Methods · Quantitative Biology 2024-09-27 Raymond Fan , Andreas Hilfinger

The evolutionary mechanisms of cooperative behavior represent a fundamental topic in complex systems and evolutionary dynamics. Real-world collective interactions, particularly in multi-agent systems, are often characterized by…

Adaptation and Self-Organizing Systems · Physics 2026-02-23 Yishen Jiang , Xin Wang , Wenqiang Zhu , Ming Wei , Longzhao Liu , Shaoting Tang , Hongwei Zheng

Biological cells encode information about their environment through biochemical signaling networks that control their internal state and response. This information is often encoded in the dynamical patterns of the signaling molecules,…

Molecular Networks · Quantitative Biology 2023-04-24 Lauritz Hahn , Aleksandra M. Walczak , Thierry Mora

Living cells encode and transmit information in the temporal dynamics of biochemical components. Gaining a detailed understanding of the input-output relationship in biological systems therefore requires quantitative measures that capture…

Molecular Networks · Quantitative Biology 2019-04-04 Lorenzo Duso , Christoph Zechner

Understanding the pattern formation in communities has been at the center of attention in various fields. Here we introduce a novel model, called an "information-particle model," which is based on the reaction-diffusion model and the…

Physics and Society · Physics 2023-07-21 Junichi Miyakoshi

Structure, composition and stability of ecological populations are shaped by the inter- and intra-species interactions within these communities. It remains to be fully understood how the interplay of these interactions with other factors,…

Populations and Evolution · Quantitative Biology 2023-01-16 Nava Leibovich , Jeremy Rothschild , Sidhartha Goyal , Anton Zilman

Communication between cells is realized by exchange of biochemical substances. Due to internal organization of living systems and variability of external parameters, the exchange is heavily influenced by perturbations of various parameters…

Chaotic Dynamics · Physics 2015-05-19 Dragutin T. Mihailovic , Igor Balaz

Technical systems have evolved over time into large and complex Interwoven Systems consisting of several to a huge number of (possibly heterogeneous) subsystems that have interdependencies. The resultant mutual influences among subsystems…

Multiagent Systems · Computer Science 2018-07-24 Neeraj Mumbuveetil Sasankan

We consider dynamic versions of the mutual information of lifetime distributions, with focus on past lifetimes, residual lifetimes and mixed lifetimes evaluated at different instants. This allows to study multicomponent systems, by…

Probability · Mathematics 2016-05-10 Jafar Ahmadi , Antonio Di Crescenzo , Maria Longobardi
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