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Navigation of microorganisms is controlled by internal processes ultimately sensitive to mechanical or chemical signaling encountered along the path. In many natural environments, such as porous soils or physiological ducts, motile species…

Many swimming bacteria naturally inhabit confined environments, yet how confinement influences their swimming behaviors remains unclear. Here, we combine experiments, continuum modeling and particle-based simulations to investigate…

Biological Physics · Physics 2025-10-13 Da Wei , Shiyuan Hu , Tangmiao Tang , Yaochen Yang , Fanlong Meng , Yi Peng

The self-organization of active particles on a two-dimensional single-occupancy lattice is investigated, with an emphasis on the effects of boundary confinement and the influence of an external mean fluid flow. The study examines collective…

Soft Condensed Matter · Physics 2024-09-25 Chiara Calascibetta , Laetitia Giraldi , Zakarya El Khiyati , Jérémie Bec

We experimentally study the dynamics of active particles (APs) in a viscoelastic fluid under various geometrical constraints such as flat walls, spherical obstacles and cylindrical cavities. We observe that the main effect of the confined…

Soft Condensed Matter · Physics 2020-07-21 N Narinder , Juan Ruben Gomez-Solano , Clemens Bechinger

We study the trajectories of a model microorganism inside three-dimensional channels with square and rectangular cross-sections. Using (i) numerical simulations based on lattice-Boltzmann method, and (ii) analytical expressions using…

Soft Condensed Matter · Physics 2024-08-16 Byjesh N. Radhakrishnan , Ahana Purushothaman , Ranabir Dey , Sumesh P Thampi

We study confined colloidal suspensions as a model system which approximates the behavior of confined small molecule glass-formers. Dense colloidal suspensions become glassier when confined between parallel glass plates. We use confocal…

Soft Condensed Matter · Physics 2015-03-13 Kazem V. Edmond , Carolyn R. Nugent , Eric R. Weeks

Despite their importance in many biological, ecological and physical processes, microorganismal fluid flows under tight confinement have not been investigated experimentally. Strong screening of Stokelets in this geometry suggests that the…

Biological Physics · Physics 2019-12-18 Raphaël Jeanneret , Dmitri O. Pushkin , Marco Polin

Bacterial colonies are a well-known example of living active matter, exhibiting collective behaviors such as nematic alignment and collective motion that play an important role in the spread of microbial infections. While the underlying…

The transport of individual entities through interconnected structures is a process of practical relevance both in biology and technology. Examples are given by diffusive dynamics of molecules in porous structures. In soft environments,…

Soft Condensed Matter · Physics 2026-02-09 Jakob Mihatsch , Andreas M. Menzel

Spontaneous growth of long-wavelength deformations is a defining feature of active fluids with orientational order. We investigate the effect of biaxial rectangular confinement on the instability of initially shear-aligned 3D isotropic…

Soft Condensed Matter · Physics 2021-01-04 Pooja Chandrakar , Minu Varghese , S. Ali Aghvami , Aparna Baskaran , Zvonimir Dogic , Guillaume Duclos

Two dimensional active fluids display a transition from turbulent to coherent flow upon decreasing the size of the confining geometry. A recent experiment suggests that the behavior in three dimensions is remarkably different; emergent…

Soft Condensed Matter · Physics 2021-08-17 Minu Varghese , Arvind Baskaran , Michael Hagan , Aparna Baskaran

Swimming at the microscale has recently garnered substantial attention due to the fundamental biological significance of swimming microorganisms and the wide range of biomedical applications for artificial microswimmers. These microswimmers…

Fluid Dynamics · Physics 2024-02-16 Ali Gürbüz , Andrew Lemus , Ebru Demir , On Shun Pak , Abdallah Daddi-Moussa-Ider

We study the influence of solid boundaries on dynamics and structure of active fluids as the height of the container, $z$, changes. Along the varying dimension, the geometry systematically increases, therefore, the confinement ($z$)…

Soft Condensed Matter · Physics 2021-09-08 Yi Fan , Kun-Ta Wu , Ali Aghvami , Seth Fraden , Kenneth Breuer

The encounter of diffusing entities underlies a wide range of natural phenomena. The dynamics of these first-passage dynamics are strongly influenced by confining geometries. Confinement modifies microscopic diffusion through conservative…

Soft Condensed Matter · Physics 2026-04-22 Guirec de Tournemire , Nicolas Fares , Yacine Amarouchene , Thomas Salez

Understanding the coupling between flow, hydrodynamic transport and dispersion of colloids with finite-size in porous media is a long-standing challenge. This problem is relevant for a broad range of natural and engineered subsurface…

Fluid Dynamics · Physics 2025-03-11 Mirko Residori , Simon Praetorius , Pietro de Anna , Axel Voigt

Experiments have shown that self-propelled particles can slide along the surface of a circular obstacle without becoming trapped over long times. Using simulations and theory, we study the impact of boundary conditions on the diffusive…

Biological Physics · Physics 2019-01-30 Theresa Jakuszeit , Ottavio A. Croze , Samuel Bell

We study the effect of confinement on glassy liquids using Random First Order Transition theory as framework. We show that the characteristic length-scale above which confinement effects become negligible is related to the point-to-set…

Disordered Systems and Neural Networks · Physics 2013-10-01 C. Cammarota , G. Gradenigo , G. Biroli

We study the effect of confinement on the three-dimensional linear instability of fastly rotating two-dimensional turbulent flows. Using the large scale friction to model the effect of top and bottom boundaries, we study the onset of…

Fluid Dynamics · Physics 2024-03-13 Chandra Shekhar Lohani , Suraj Kumar Nayak , Kannabiran Seshasayanan

Confinement can have a dramatic effect on the behavior of all sorts of particulate systems and it therefore is an important phenomenon in many different areas of physics and technology. Here, we investigate the role played by the softness…

Geometric confinement plays an important role in the dynamics of natural and synthetic microswimmers from bacterial cells to self-propelled particles in high-throughput microfluidic devices. However, little is known about the effects of…

Fluid Dynamics · Physics 2014-11-13 Alan Cheng Hou Tsang , Eva Kanso
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