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We suggest a geometrical mechanism for the ordering of slender filaments inside non-isotropic containers, using cortical microtubules in plant cells and packing of viral genetic material inside capsids as concrete examples. We show…

Soft Condensed Matter · Physics 2021-01-13 Doron Grossman , Eytan Katzav , Eran Sharon

The effect of out-of-plane orientational freedom on the orientational ordering properties of a monolayer of hard ellipsoids is studied using Parsons-Lee scaling approach and replica exchange Monte Carlo computer simulation. Prolate and…

We conduct experiments and simulations to study the disordered packing of rods in small containers. Experiments study cylindrical rods with aspect ratio ranging from 4 to 32; simulations use of spherocylinders with similar aspect ratios. In…

Soft Condensed Matter · Physics 2019-08-23 Julian O. Freeman , Sean Peterson , Cong Cao , Yujie Wang , Scott V. Franklin , Eric R. Weeks

We examine the ordering properties of rectangular hard rods with length L and diameter D at a single planar wall and between two parallel hard walls using the second-virial density functional theory. The theory is implemented in the…

Soft Condensed Matter · Physics 2016-02-17 R. Aliabadi , M. Moradi , S. Varga

We study the behavior of self avoiding polymers in a background of vertically aligned rods that are either frozen into random positions or free to move horizontally. We find that in both cases the polymer chains are highly elongated, with…

Soft Condensed Matter · Physics 2009-11-10 J. M. Deutsch , M. Warkentin

The effect of strong confinement on the positional and orientational ordering is examined in a system of hard rectangular rods with length L and diameter D (L>D) using the Parsons-Lee modification of the second virial density functional…

Soft Condensed Matter · Physics 2018-01-24 Roohollah Aliabadi , Peter Gurin , Enrique Velasco , Szabolcs Varga

Anisotropic, finite-sized particles, common in environmental and industrial flows, exhibit complex dynamics distinct from those of small, spherical particles. Their shape introduces orientation-dependent forces, and their finite size…

Fluid Dynamics · Physics 2025-08-28 Helena E. Schreder , Kartik Krishna , Steven L. Brunton , Michelle H. DiBenedetto

Granular material exposed to shear shows a variety of unique phenomena: Reynolds dilatancy, positional order and orientational order effects may compete in the shear zone. We study granular packings consisting of macroscopic prolate, oblate…

Soft Condensed Matter · Physics 2014-08-11 Sandra Wegner , Ralf Stannarius , Axel Boese , Georg Rose , Balázs Szabó , Ellák Somfai , Tamás Börzsönyi

We report an experimental study of the development of orientational order in a crumpled sheet, with a particular focus on the role played by the geometry of confinement. Our experiments are performed on elastomeric sheets immersed in a…

Soft Condensed Matter · Physics 2014-10-30 Anne Dominique Cambou , Narayanan Menon

Anisotropic, submicrometer sized particles are versatile systems providing interesting features in creating ordering in 2-dimensional systems. Combining hard ellipsoids with a soft shell further enhances the opportunities to trigger and…

The vortex dynamics in a low temperature superconductor deposited on top of a rectangular array of micrometer size permalloy triangles is investigated experimentally. The rectangular unit cell is such that neighboring triangles physically…

Superconductivity · Physics 2009-11-13 J. Van de Vondel , A. V. Silhanek , V. Metlushko , P. Vavassori , B. Ilic , V. V. Moshchalkov

Rod-like objects at high packing fractions can form smectic phases, where the rods break rotational and translational symmetry by forming lamellae. Smectic defects thereby include both discontinuities in the rod orientational order…

Soft Condensed Matter · Physics 2023-12-01 Ethan I. L. Jull , Gerardo Campos-Villalobos , Qianjing Tang , Marjolein Dijkstra , Lisa Tran

Colloids self-assemble into various organized superstructures determined by particle interactions. There is a tremendous progress in both the scientific understanding and applications of self-assemblies of single-type identical particles.…

Soft Condensed Matter · Physics 2016-09-23 Chenhui Peng , Taras Turiv , Yubing Guo , Sergij V. Shiyanovskii , Qi-Huo Wei , Oleg D. Lavrentovich

Recent studies of two-dimensional poly-disperse disc systems revealed a coordinated self-organisation of cell stresses and shapes, with certain distributions collapsing onto a master form for many processes, size distributions, friction…

Soft Condensed Matter · Physics 2025-08-26 Dominik Krengel , Haoran Jiang , Takashi Matsushima , Raphael Blumenfeld

Through extensive Monte Carlo simulations, we systematically study the effect of chain stiffness on the packing ability of linear polymers composed of hard spheres in extremely confined monolayers, corresponding effectively to 2D films.…

We report numerical results of effective attractive forces on the packing properties of two-dimensional elongated grains. In deposits of non-cohesive rods in 2D, the topology of the packing is mainly dominated by the formation of ordered…

Soft Condensed Matter · Physics 2011-07-18 R. C. Hidalgo , D. Kadau , T. Kanzaki , H. J. Herrmann

Variations of transport efficiency in structured environments between distinct individuals in actively self-propelled systems is both hard to study and poorly understood. Here, we study the transport of a non-tumbling {\ecoli} strain, an…

Soft Condensed Matter · Physics 2023-08-28 Pooja Chopra , David Quint , Ajay Gopinathan , Bin Liu

We present a systematic study of the influence of cell geometry on the orientational distribution of microtubules (MTs) nucleated from a single microtubule organizing center (MTOC). For simplicity we consider an elliptical cell geometry, a…

Biomolecules · Quantitative Biology 2022-11-30 Panayiotis Foteinopoulos , Bela M. Mulder

Granular material flowing through bottlenecks like the openings of silos tend to clog and to inhibit further flow. We study this phenomenon in a three-dimensional hopper for spherical and shape-anisotropic particles by means of X-ray…

Soft Condensed Matter · Physics 2016-09-12 Tamás Börzsönyi , Ellák Somfai , Balázs Szabó , Sandra Wegner , Pascal Mier , Georg Rose , Ralf Stannarius

Non-spherical emulsion droplets can be stabilized by densely packed colloidal particles adsorbed at their surface. In order to understand the microstructure of these surface packings, the ordering of hard spheres on ellipsoidal surfaces is…

Soft Condensed Matter · Physics 2015-04-16 Christopher J. Burke , Badel L. Mbanga , Zengyi Wei , Patrick T. Spicer , Timothy J. Atherton
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