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Drug-Target binding Affinity (DTA) prediction is essential for drug discovery. Despite the application of deep learning methods to DTA prediction, the achieved accuracy remain suboptimal. In this work, inspired by the recent success of…

Biomolecules · Quantitative Biology 2024-07-23 Qizhi Pei , Lijun Wu , Zhenyu He , Jinhua Zhu , Yingce Xia , Shufang Xie , Rui Yan

This paper evaluates Few-Shot Prompting with Large Language Models for Named Entity Recognition (NER). Traditional NER systems rely on extensive labeled datasets, which are costly and time-consuming to obtain. Few-Shot Prompting or…

Information Retrieval · Computer Science 2024-09-05 Hédi Zeghidi , Ludovic Moncla

This study combines two different learning paradigms, k-nearest neighbor (k-NN) rule, as memory-based learning paradigm and relevance vector machines (RVM), as statistical learning paradigm. This combination is performed in kernel space and…

Machine Learning · Computer Science 2021-03-09 Sara Hosseinzadeh Kassani , Farhood Rismanchian , Peyman Hosseinzadeh Kassani

The K-Nearest Neighbors (KNN) algorithm is widely used for classification and regression; however, it suffers from limitations, including the equal treatment of all samples. We propose Information-Modified KNN (IM-KNN), a novel approach…

Machine Learning · Computer Science 2025-07-11 Mohammad Ali Vahedifar , Azim Akhtarshenas , Mohammad Mohammadi Rafatpanah , Maryam Sabbaghian

Retrieval-augmented language models (LMs) use non-parametric memory to substantially outperform their non-retrieval counterparts on perplexity-based evaluations, but it is an open question whether they achieve similar gains in few- and…

Computation and Language · Computer Science 2022-11-03 Weijia Shi , Julian Michael , Suchin Gururangan , Luke Zettlemoyer

Named entity recognition (NER) is highly sensitive to sentential syntactic and semantic properties where entities may be extracted according to how they are used and placed in the running text. To model such properties, one could rely on…

Computation and Language · Computer Science 2020-10-30 Yuyang Nie , Yuanhe Tian , Yan Song , Xiang Ao , Xiang Wan

One of the simplest and most effective classical machine learning algorithms is the $k$-nearest neighbors algorithm ($k$NN) which classifies an unknown test state by finding the $k$ nearest neighbors from a set of $M$ train states. Here we…

Quantum Physics · Physics 2021-06-18 Afrad Basheer , A. Afham , Sandeep K. Goyal

This paper presents a novel nearest neighbor search algorithm achieving TPU (Google Tensor Processing Unit) peak performance, outperforming state-of-the-art GPU algorithms with similar level of recall. The design of the proposed algorithm…

Performance · Computer Science 2022-07-01 Felix Chern , Blake Hechtman , Andy Davis , Ruiqi Guo , David Majnemer , Sanjiv Kumar

Named Entity Recognition (NER) aims to extract and classify entity mentions in the text into pre-defined types (e.g., organization or person name). Recently, many works have been proposed to shape the NER as a machine reading comprehension…

Computation and Language · Computer Science 2023-09-21 Yibo Wang , Wenting Zhao , Yao Wan , Zhongfen Deng , Philip S. Yu

Named Entity Recognition have been studied for different languages like English, German, Spanish and many others but no study have focused on Nepali language. In this paper we propose a neural based Nepali NER using latest state-of-the-art…

Computation and Language · Computer Science 2019-08-19 Oyesh Mann Singh , Ankur Padia , Anupam Joshi

Nested named entity recognition (NER) aims to identify the entity boundaries and recognize categories of the named entities in a complex hierarchical sentence. Some works have been done using character-level, word-level, or lexicon-level…

Computation and Language · Computer Science 2022-11-08 Yuan Sui , Fanyang Bu , Yingting Hu , Wei Yan , Liang Zhang

Despite a large amount of attention on adversarial examples, very few works have demonstrated an effective defense against this threat. We examine Deep k-Nearest Neighbor (DkNN), a proposed defense that combines k-Nearest Neighbor (kNN) and…

Cryptography and Security · Computer Science 2019-03-21 Chawin Sitawarin , David Wagner

Graph neural networks (GNNs) have been widely applied to numerous fields. A recent work which combines layered structure and residual connection proposes an improved deep architecture to extend CAmouflage-REsistant GNN (CARE-GNN) to deep…

Machine Learning · Computer Science 2022-02-15 Yufan Zeng , Jiashan Tang

kNN based ensemble methods minimise the effect of outliers by identifying a set of data points in the given feature space that are nearest to an unseen observation in order to predict its response by using majority voting. The ordinary…

Machine Learning · Computer Science 2022-05-31 Amjad Ali , Muhammad Hamraz , Naz Gul , Dost Muhammad Khan , Zardad Khan , Saeed Aldahmani

More recently, Named Entity Recognition hasachieved great advances aided by pre-trainingapproaches such as BERT. However, currentpre-training techniques focus on building lan-guage modeling objectives to learn a gen-eral representation,…

Computation and Language · Computer Science 2020-10-29 Mengge Xue , Bowen Yu , Zhenyu Zhang , Tingwen Liu , Yue Zhang , Bin Wang

Named Entity Recognition (NER) serves as a foundational component in many natural language processing (NLP) pipelines. However, current NER models typically output a single predicted label sequence without any accompanying measure of…

Computation and Language · Computer Science 2026-01-27 Matthew Singer , Srijan Sengupta , Karl Pazdernik

Few-shot Named Entity Recognition (NER), the task of identifying named entities with only a limited amount of labeled data, has gained increasing significance in natural language processing. While existing methodologies have shown some…

Computation and Language · Computer Science 2024-08-26 Yafeng Zhang , Zilan Yu , Yuang Huang , Jing Tang

Recent advances in Named Entity Recognition (NER) show that document-level contexts can significantly improve model performance. In many application scenarios, however, such contexts are not available. In this paper, we propose to find…

Computation and Language · Computer Science 2022-12-09 Xinyu Wang , Yong Jiang , Nguyen Bach , Tao Wang , Zhongqiang Huang , Fei Huang , Kewei Tu

Named Entity Recognition (NER) and Relation Classification (RC) are important steps in extracting information from unstructured text and formatting it into a machine-readable format. We present a survey of recent deep learning models that…

Computation and Language · Computer Science 2024-03-28 Sakher Khalil Alqaaidi , Elika Bozorgi , Afsaneh Shams , Krzysztof Kochut

Embedding entities and relations into continuous vector spaces has attracted a surge of interest in recent years. Most embedding methods assume that all test entities are available during training, which makes it time-consuming to retrain…

Machine Learning · Computer Science 2024-02-23 Yongquan He , Zihan Wang , Peng Zhang , Zhaopeng Tu , Zhaochun Ren
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